CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Scas_Contig632.19
(
Saccharomyces castellii
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
Scas_Contig632.19
T21483_0.6
SGD (2003-Oct-3)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig632.19
KH
194
243
LSRAIGRIAGKDGKTKFAIENATRTRIVLADTKIHILGGFTHIRMAREAV
Links
Other
KH
family RBPs
Other
Saccharomyces castellii
RBPs
220 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DEHA0G05258g
Debaryomyces hansenii
DEHA0G05258g
N
0.980
LELG_05249
Lodderomyces elongisporus
LELG_05249
N
0.980
orf19.7618
Candida albicans
orf19.7618
N
0.980
CPAG_01545
Candida parapsilosis
CPAG_01545
N
0.980
CLUG_01545
Candida lusitaniae
CLUG_01545
N
0.980
ZYRO0D11440g
Zygosaccharomyces rouxii
ZYRO0D11440g
N
0.980
SAKL0G03740g
Lachancea kluyveri
SAKL0G03740g
N
0.980
estExt_genewise1_human.C_chr_1.20929
Pichia stipitis
estExt_genewise1_human.C_chr_1.20929
N
0.980
Cd36_35296
Candida dubliniensis
Cd36_35296
N
0.980
CTRG_05813
Candida tropicalis
CTRG_05813
N
0.980
CAGL0K09460g
Candida glabrata
CAGL0K09460g
N
0.980
A7THL8_VANPO
Vanderwaltozyma polyspora
A7THL8_VANPO
N
0.980
Kwal_18864
Kluyveromyces waltii
Kwal_18864
N
0.960
20872_YOR145C
Saccharomyces paradoxus
20872_YOR145C
N
0.960
23888_YOR145C
Saccharomyces bayanus
23888_YOR145C
N
0.960
PGUG_02960
Candida guilliermondii
PGUG_02960
N
0.960
PNO1
Ashbya gossypii
PNO1
N
0.960
Skud_Contig1833.8
Saccharomyces kudriavzevii
Skud_Contig1833.8
N
0.960
KLTH0G02574g
Kluyveromyces thermotolerans
KLTH0G02574g
N
0.960
KLLA0C06446g
Kluyveromyces lactis
KLLA0C06446g
N
0.960
PNO1
Saccharomyces cerevisiae
YOR145C
N
0.960
20359_YOR145C
Saccharomyces mikatae
20359_YOR145C
N
0.941
estExt_fgenesh1_kg.C_140013
Cochliobolus heterostrophus C5
estExt_fgenesh1_kg.C_140013
N
0.840
rbp28
Schizosaccharomyces pombe
SPAC2C4.11c
N
0.840
estExt_Genewise1Plus.C_chr_70397
Mycosphaerella graminicola
estExt_Genewise1Plus.C_chr_70397
N
0.840
estExt_fgenesh5_pg.C_40050
Trichoderma reesei
estExt_fgenesh5_pg.C_40050
N
0.820
SJAG_03872
Schizosaccharomyces japonicus
SJAG_03872
N
0.820
YALI0E01122g
Yarrowia lipolytica
YALI0E01122g
N
0.820
PTTG_01898
Puccinia triticina
PTTG_01898
N
0.820
e_gw1.3.1059.1
Mycosphaerella fijiensis
e_gw1.3.1059.1
N
0.820
CIMG_07268
Coccidioides immitis
CIMG_07268
N
0.820
CPSG_08784
Coccidioides posadasii
CPSG_08784
N
0.820
FOXG_00036
Fusarium oxysporum
FOXG_00036
N
0.820
estExt_Genewise1Plus.C_91132
Trichoderma virens
estExt_Genewise1Plus.C_91132
N
0.820
FVEG_01480
Fusarium verticillioides
FVEG_01480
N
0.820
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
Nectria haematococca
estExt_fgenesh1_pg.C_sca_1_chr1_3_00036
N
0.820
PNO1
Taeniopygia guttata
ENSTGUG00000002369
N
0.820
fgenesh1_pm.C_scaffold_14000035
Trichoderma atroviride
fgenesh1_pm.C_scaffold_14000035
N
0.820
FGSG_01345
Fusarium graminearum
FGSG_01345
N
0.820
GSTUMT00003923001
Tuber melanosporum
GSTUMT00003923001
N
0.820
AMAG_12889
Allomyces macrogynus
AMAG_12889
N
0.800
HCAG_04100
Histoplasma capsulatum
HCAG_04100
N
0.800
MCYG_07269
Microsporum canis
MCYG_07269
N
0.800
pno1
Xenopus tropicalis
ENSXETG00000017349
N
0.800
AMAG_14219
Allomyces macrogynus
AMAG_14219
N
0.800
BC1G_12211
Botrytis cinerea
BC1G_12211
N
0.800
ARB_00984
Arthroderma benhamiae
ARB_00984
N
0.800
pno1
Danio rerio
ENSDARG00000008502
N
0.800
estExt_Genewise1Plus.C_10659
Myceliophthora thermophila
estExt_Genewise1Plus.C_10659
N
0.800
TESG_04215
Trichophyton tonsurans
TESG_04215
N
0.800
Q6VBQ6_ORYLA
Oryzias latipes
ENSORLG00000002371
N
0.800
TERG_01665
Trichophyton rubrum
TERG_01665
N
0.800
TEQG_07954
Trichophyton equinum
TEQG_07954
N
0.800
fgenesh3_pm.54__15
Postia placenta
fgenesh3_pm.54__15
N
0.800
e_gw1.3.2749.1
Cryphonectria parasitica
e_gw1.3.2749.1
N
0.800
EAT88982.1
Phaeosphaeria nodorum
EAT88982.1
N
0.800
Chlre2_kg.scaffold_20000177
Chlamydomonas reinhardtii
Chlre2_kg.scaffold_20000177
N
0.800
UREG_07832
Uncinocarpus reesii
UREG_07832
N
0.800
TRV_03730
Trichophyton verrucosum
TRV_03730
N
0.800
SS1G_04290
Sclerotinia sclerotiorum
SS1G_04290
N
0.800
estExt_Genewise1Plus.C_600117
Volvox carteri
estExt_Genewise1Plus.C_600117
N
0.800
SNOG_03777
Stagonospora nodorum
SNOG_03777
N
0.800
PNO1
Meleagris gallopavo
ENSMGAG00000004514
N
0.800
MGYG_04767
Microsporum gypseum
MGYG_04767
N
0.800
RO3G_00885
Rhizopus oryzae
RO3G_00885
N
0.800
Pc14g01220
Penicillium chrysogenum
Pc14g01220
N
0.800
PNO1_CHICK
Gallus gallus
ENSGALG00000009093
N
0.800
e_gww2.1.865.1
Phanerochaete chrysosporium
e_gww2.1.865.1
N
0.800
RO3G_05288
Rhizopus oryzae
RO3G_05288
N
0.800
PNO1
Cavia porcellus
ENSCPOG00000010130
N
0.780
PNO1
Anolis carolinensis
ENSACAG00000001218
N
0.780
PNO1_BOVIN
Bos taurus
ENSBTAG00000010604
N
0.780
PNO1
Canis familiaris
ENSCAFG00000003256
N
0.780
LOC100389955
Callithrix jacchus
ENSCJAG00000006564
N
0.780
PNO1
Homo sapiens
ENSG00000115946
N
0.780
PNO1
Ochotona princeps
ENSOPRG00000009643
N
0.780
PNO1
Procavia capensis
ENSPCAG00000016146
N
0.780
ENSOCUG00000022236
Oryctolagus cuniculus
ENSOCUG00000022236
N
0.780
ENSOCUG00000006100
Oryctolagus cuniculus
ENSOCUG00000006100
N
0.780
PNO1
Ornithorhynchus anatinus
ENSOANG00000008388
N
0.780
ENSPPYG00000012353
Pongo pygmaeus
ENSPPYG00000012353
N
0.780
PNO1
Pan troglodytes
ENSPTRG00000011999
N
0.780
PNO1
Tetraodon nigroviridis
ENSTNIG00000009825
N
0.780
PNO1
Sus scrofa
ENSSSCG00000008352
N
0.780
Pno1
Rattus norvegicus
ENSRNOG00000005524
N
0.780
PNO1
Pteropus vampyrus
ENSPVAG00000012695
N
0.780
PNO1
Monodelphis domestica
ENSMODG00000003567
N
0.780
XM_001095777.1
Macaca mulatta
ENSMMUG00000030357
N
0.780
e_gw1.2.2126.1
Schizophyllum commune
e_gw1.2.2126.1
N
0.780
PNO1
Gorilla gorilla
ENSGGOG00000009158
N
0.780
PNO1
Erinaceus europaeus
ENSEEUG00000009611
N
0.780
LOC100061904
Equus caballus
ENSECAG00000011263
N
0.780
Pno1
Dipodomys ordii
ENSDORG00000006867
N
0.780
PNO1
Loxodonta africana
ENSLAFG00000000046
N
0.780
PNO1
Macropus eugenii
ENSMEUG00000004504
N
0.780
Q7YRC8_MACMU
Macaca mulatta
ENSMMUG00000017461
N
0.780
PNO1
Tursiops truncatus
ENSTTRG00000014002
N
0.780
PNO1
Myotis lucifugus
ENSMLUG00000010850
N
0.780
PNO1
Microcebus murinus
ENSMICG00000010897
N
0.780
PNO1
Vicugna pacos
ENSVPAG00000012083
N
0.780
PABG_01374
Paracoccidioides brasiliensis
PABG_01374
N
0.780
PNO1
Takifugu rubripes
ENSTRUG00000012470
N
0.780
estExt_Genewise1.C_10689
Thielavia terrestris
estExt_Genewise1.C_10689
N
0.780
PTRG_02803
Pyrenophora tritici repentis
PTRG_02803
N
0.780
SOCG_04140
Schizosaccharomyces octosporus
SOCG_04140
N
0.780
XP_791733.2
Strongylocentrotus purpuratus
XP_791733.2
N
0.780
BDBG_01721
Blastomyces dermatitidis
BDBG_01721
N
0.780
estExt_Genewise1.C_260084
Melampsora laricis populina
estExt_Genewise1.C_260084
N
0.780
XP_798188.2
Strongylocentrotus purpuratus
XP_798188.2
N
0.780
XP_001202160.1
Strongylocentrotus purpuratus
XP_001202160.1
N
0.780
XP_001202155.1
Strongylocentrotus purpuratus
XP_001202155.1
N
0.780
estExt_Genewise1Plus.C_10658
Mucor circinelloides
estExt_Genewise1Plus.C_10658
N
0.780
gw1.1.2472.1
Pleurotus ostreatus
gw1.1.2472.1
N
0.780
SPOG_00402
Schizosaccharomyces cryophilus
SPOG_00402
N
0.780
EDP42908.1
Malassezia globosa
EDP42908.1
N
0.780
Ame_R013855
Ailuropoda melanoleuca
Ame_R013855
N
0.780
e_gw1.12.287.1
Serpula lacrymans
e_gw1.12.287.1
N
0.780
AO090003000014
Aspergillus oryzae
CADAORAG00000701
N
0.765
AFLA_037860
Aspergillus flavus
CADAFLAG00003159
N
0.765
PDK_20s1554761g001
Phoenix dactylifera
PDK_20s1554761g001
N
0.760
fgeneshTA2_pg.C_scaffold_14000176
Trichoplax adhaerens
fgeneshTA2_pg.C_scaffold_14000176
N
0.760
s_468317
Phytophthora sojae
s_468317
N
0.760
estExt_Genewise1Plus.C_250095
Phycomyces blakesleeanus
estExt_Genewise1Plus.C_250095
N
0.760
fgenesh2_pm.scaffold_78000001
Branchiostoma floridae
fgenesh2_pm.scaffold_78000001
N
0.760
fgenesh2_pg.scaffold_196000015
Branchiostoma floridae
fgenesh2_pg.scaffold_196000015
N
0.760
Pno1
Mus musculus
ENSMUSG00000020116
N
0.760
estExt_Genewise1Plus.C_430054
Neurospora tetrasperma
estExt_Genewise1Plus.C_430054
N
0.760
fgenesh1_pm.C_scaffold_5000030
Phytophthora ramorum
fgenesh1_pm.C_scaffold_5000030
N
0.760
estExt_fgenesh2_kg.C_20130
Agaricus bisporus
estExt_fgenesh2_kg.C_20130
N
0.760
e_gw1.2.756.1
Heterobasidion annosum
e_gw1.2.756.1
N
0.760
AAQ24169
Xenopus laevis
AAQ24169
N
0.760
NCU07956
Neurospora crassa
NCU07956
N
0.760
SPRG_02415
Saprolegnia parasitica
SPRG_02415
N
0.760
UM03495
Ustilago maydis
UM03495
N
0.760
e_gw1.3.666.1
Neurospora discreta
e_gw1.3.666.1
N
0.760
PITG_01680
Phytophthora infestans
PITG_01680
N
0.760
e_gwh1.2.512.1
Laccaria bicolor
e_gwh1.2.512.1
N
0.760
PNO1
Gasterosteus aculeatus
ENSGACG00000012047
N
0.760
Q8AVH4
Xenopus laevis
Q8AVH4
N
0.760
AAH42279
Xenopus laevis
AAH42279
N
0.760
fgenesh_newKGs_pm.139__21
Emiliania huxleyi
fgenesh_newKGs_pm.139__21
N
0.740
Cucsa.201760
Cucumis sativus
Cucsa.201760
N
0.740
28525.m000262
Ricinus communis
28525.m000262
N
0.740
cassava30594.valid.m1
Manihot esculenta
cassava30594.valid.m1
N
0.740
e_gw1.8.261.1
Sporobolomyces roseus
e_gw1.8.261.1
N
0.740
Cucsa.041830
Cucumis sativus
Cucsa.041830
N
0.740
e_gw1.226.39.1
Physcomitrella patens
e_gw1.226.39.1
N
0.740
fgenesh1_pg.scaffold_18000119
Nematostella vectensis
fgenesh1_pg.scaffold_18000119
N
0.740
fgenesh1_kg.C_scaffold_5000048
Selaginella moellendorfii
fgenesh1_kg.C_scaffold_5000048
N
0.740
estExt_Genewise1.C_5820041
Capitella teleta
estExt_Genewise1.C_5820041
N
0.740
B9GHH7_POPTR
Populus trichocarpa
POPTR_0001s47320
N
0.740
B9N5M8_POPTR
Populus trichocarpa
POPTR_0011s16880
N
0.740
estExt_fgenesh1_pg.C_110137
Monosiga brevicollis
estExt_fgenesh1_pg.C_110137
N
0.740
ANIA_05785
Aspergillus nidulans
CADANIAG00003265
N
0.740
ATEG_07413
Aspergillus terreus
CADATEAG00001505
N
0.740
ppa011086m
Prunus persica
ppa011086m
N
0.740
ppa009897m
Prunus persica
ppa009897m
N
0.740
XP_002162789.1
Hydra magnipapillata
XP_002162789.1
N
0.740
MGG_05136
Magnaporthe oryzae
MGG_05136
N
0.740
SPPG_04498
Spizellomyces punctatus
SPPG_04498
N
0.740
ACLA_088200
Aspergillus clavatus
CADACLAG00008695
N
0.740
PMAA_046470
Penicillium marneffei
PMAA_046470
N
0.740
MDP0000754021
Malus x domestica
MDP0000754021
N
0.740
e_gw1.15.315.1
Tremella mesenterica
e_gw1.15.315.1
N
0.740
ENSCJAG00000022611
Callithrix jacchus
ENSCJAG00000022611
N
0.740
3712.m00082
Tetrahymena thermophila
3712.m00082
N
0.740
estExt_fgenesh1_pg.C_190237
Phytophthora capsici
estExt_fgenesh1_pg.C_190237
N
0.740
MDP0000120063
Malus x domestica
MDP0000120063
N
0.740
MDP0000265633
Malus x domestica
MDP0000265633
N
0.740
MDP0000136407
Malus x domestica
MDP0000136407
N
0.740
PK08146.1
Cannabis sativa
PK08146.1
N
0.740
GLRG_03940
Colletotrichum graminicola
GLRG_03940
N
0.731
AFUA_6G06430
Aspergillus fumigatus
CADAFUAG00001979
N
0.720
GSPATP00021981001
Paramecium tetraurelia
GSPATP00021981001
N
0.720
mgf006621m
Mimulus guttatus
mgf006621m
N
0.720
Bm1_42995
Brugia malayi
Bm1_42995
N
0.720
LOC_Os03g02420
Oryza sativa
LOC_Os03g02420
N
0.720
SB03G036840
Sorghum bicolor
Sb03g036840
N
0.720
NFIA_052070
Neosartorya fischeri
CADNFIAG00004473
N
0.720
PHUM356890
Pediculus humanus
PHUM356890
N
0.720
Glyma08g44800.1
Glycine max
Glyma08g44800.1
N
0.720
Glyma18g08080.1
Glycine max
Glyma18g08080.1
N
0.720
BGIOSIBCE009391
Oryza indica
BGIOSIBCE009391
N
0.720
Glyma18g08100.1
Glycine max
Glyma18g08100.1
N
0.720
XM_001110046.1
Macaca mulatta
ENSMMUG00000003556
N
0.720
LOAG_05624
Loa loa
LOAG_05624
N
0.720
EFA79428.1
Polysphondylium pallidum
EFA79428.1
N
0.720
DGIL_AUG5s4501g8t1
Acyrtosiphon pisum
DGIL_AUG5s4501g8t1
N
0.720
e_gw1.13.100.1
Volvox carteri
e_gw1.13.100.1
N
0.720
nasonia_NCBI_hmm120183
Nasonia vitripennis
nasonia_NCBI_hmm120183
N
0.720
LOC_Os01g57910
Oryza sativa
LOC_Os01g57910
N
0.720
amel4_ncbi_hmm14037
Apis mellifera
amel4_ncbi_hmm14037
N
0.720
GSPATP00020703001
Paramecium tetraurelia
GSPATP00020703001
N
0.720
GRMZM2G139198
Zea mays
GRMZM2G139198
N
0.720
GRMZM2G085005
Zea mays
GRMZM2G085005
N
0.720
BRADI2G52180
Brachypodium distachyon
BRADI2G52180
N
0.720
WUBG_12774
Wuchereria bancrofti
WUBG_12774
N
0.720
cassava7030.valid.m1
Manihot esculenta
cassava7030.valid.m1
N
0.720
EDO07242.1
Babesia bovis
EDO07242.1
N
0.700
ENSCSAVG00000001303
Ciona savignyi
ENSCSAVG00000001303
N
0.700
Medtr3g080390
Medicago truncatula
Medtr3g080390
N
0.700
BGIBMGA014064
Bombyx mori
BGIBMGA014064
N
0.700
GP3.070330
Batrachochytrium dendrobatidis
GP3.070330
N
0.700
GID1.0042265
Dictyostelium purpureum
GID1.0042265
N
0.700
Pa_3_1680
Podospora anserina
Pa_3_1680
N
0.700
27316
Aureococcus anophagefferens
27316
N
0.700
CNBG_1323
Cryptococcus neoformans
CNBG_1323
N
0.700
PTSG_04415
Salpingoeca rosetta
PTSG_04415
N
0.700
CMF059C
Cyanidioschyzon merolae
CMF059C
N
0.700
AT3G13230
Arabidopsis thaliana
AT3G13230-TAIR-G
N
0.700
e_gw1.18.222.1
Chlorella NC64A
e_gw1.18.222.1
N
0.700
AMSG_02733
Thecamonas trahens
AMSG_02733
N
0.700
XM_002882767.1
Arabidopsis lyrata
scaffold_301521.1
N
0.700
LjSGA_017760.2
Lotus japonicus
LjSGA_017760.2
N
0.700
Genemark1.5719_g
Coccomyxa C 169
Genemark1.5719_g
N
0.700
ENSCING00000009577
Ciona intestinalis
ENSCING00000009577
N
0.700
PHATRDRAFT_9929
Phaeodactylum tricornutum
Phatr9929
N
0.700
PDK_20s1552091g001
Phoenix dactylifera
PDK_20s1552091g001
N
0.700
pno1
Dictyostelium discoideum
DDB_G0287557
N
0.700
fgeneshCV_pg.C_scaffold_11000142
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_11000142
N
0.700