U2AF2 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000008106 T42059_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.957
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000010931 RRM 149 223
ENSTNIP00000010931 RRM 259 329
ENSTNIP00000010931 RRM 393 454

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.768
AAEL002818 Aedes aegypti AAEL002818 I 0.774
AAH44032 Xenopus laevis AAH44032 I 0.952
AGAP002908 Anopheles gambiae AGAP002908 I 0.769
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.788
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.957
Aqu1.223751 Amphimedon queenslandica Aqu1.223751 I 0.000
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.784
CBG15152 Caenorhabditis briggsae CBG15152 I 0.701
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.774
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.774
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.721
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.769
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.769
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.767
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.775
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.876
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.957
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.957
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.875
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.784
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.808
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.746
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.779
GD24494 Drosophila simulans FBgn0195829 I 0.779
GE15975 Drosophila yakuba FBgn0233531 I 0.779
GF19596 Drosophila ananassae FBgn0096603 I 0.779
GG19328 Drosophila erecta FBgn0111532 I 0.779
GH12033 Drosophila grimshawi FBgn0119512 I 0.769
GI14308 Drosophila mojavensis FBgn0137061 I 0.769
GJ19364 Drosophila virilis FBgn0206507 I 0.716
GK10063 Drosophila willistoni FBgn0212078 I 0.779
GL15893 Drosophila persimilis FBgn0153497 I 0.779
GM13406 Drosophila sechellia FBgn0168337 I 0.779
LOC100050729 Equus caballus ENSECAG00000010110 I 0.957
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.817
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.957
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.793
PHUM460480 Pediculus humanus PHUM460480 I 0.769
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.952
Smp_019690 Schistosoma mansoni Smp_019690 I 0.750
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.947
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.817
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.995
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.957
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.952
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.817
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.995
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.957
U2af2 Mus musculus ENSMUSG00000030435 I 0.957
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.981
U2AF2 Homo sapiens ENSG00000063244 D 0.957
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.952
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.957
U2AF2 Felis catus ENSFCAG00000011504 I 0.764
u2af2a Danio rerio ENSDARG00000012505 I 0.981
u2af2b Danio rerio ENSDARG00000011740 I 0.957
U2af50 Drosophila melanogaster FBgn0005411 D 0.779
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.822