CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA25725-RB
(
Drosophila pseudoobscura
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0247102
T44395_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret
M110_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00114
0.971
aret
M003_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00003
0.971
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0291898
RRM
365
434
MFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALKAQDALHNVKTLAGMY
FBpp0291898
RRM
452
518
LFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIME
FBpp0291898
RRM
735
805
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0291899
RRM
142
211
MFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALKAQDALHNVKTLAGMY
FBpp0291899
RRM
229
296
LFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0291899
RRM
512
582
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB00394.1
Alternaria brassicicola
AB00394.1
N
0.000
ACLA_061920
Aspergillus clavatus
CADACLAG00005985
N
0.000
AFLA_090330
Aspergillus flavus
CADAFLAG00008718
N
0.000
AFUA_3G02380
Aspergillus fumigatus
CADAFUAG00000282
N
0.000
An01g01060
Aspergillus niger
CADANGAG00000104
N
0.000
ANIA_09362
Aspergillus nidulans
CADANIAG00001149
N
0.000
AO090120000034
Aspergillus oryzae
CADAORAG00011213
N
0.000
ATEG_07467
Aspergillus terreus
CADATEAG00003016
N
0.000
BC1G_10530
Botrytis cinerea
BC1G_10530
N
0.000
BDBG_04724
Blastomyces dermatitidis
BDBG_04724
N
0.000
CHGG_01857
Chaetomium globosum
CHGG_01857
N
0.000
CIMG_04462
Coccidioides immitis
CIMG_04462
N
0.000
CPSG_06303
Coccidioides posadasii
CPSG_06303
N
0.000
EAT83092.1
Phaeosphaeria nodorum
EAT83092.1
N
0.000
estExt_fgenesh3_kg.C_70195
Neurospora discreta
estExt_fgenesh3_kg.C_70195
N
0.000
estExt_Genewise1.C_270092
Cochliobolus heterostrophus C5
estExt_Genewise1.C_270092
N
0.000
estExt_Genewise1.C_chr_10003
Mycosphaerella graminicola
estExt_Genewise1.C_chr_10003
N
0.000
estExt_Genewise1.C_sca_3_chr4_2_00935
Nectria haematococca
estExt_Genewise1.C_sca_3_chr4_2_00935
N
0.000
estExt_Genewise1Plus.C_50321
Neurospora tetrasperma
estExt_Genewise1Plus.C_50321
N
0.000
estExt_Genewise1Plus.C_51141
Cryphonectria parasitica
estExt_Genewise1Plus.C_51141
N
0.000
fgenesh1_pg.00771_#_421
Aspergillus carbonarius
fgenesh1_pg.00771_#_421
N
0.000
fgenesh1_pg.C_scaffold_49000019
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_49000019
N
0.000
FGSG_06860
Fusarium graminearum
FGSG_06860
N
0.000
FOXG_01966
Fusarium oxysporum
FOXG_01966
N
0.000
FVEG_05126
Fusarium verticillioides
FVEG_05126
N
0.000
GLRG_01478
Colletotrichum graminicola
GLRG_01478
N
0.000
GSTUMT00005341001
Tuber melanosporum
GSTUMT00005341001
N
0.000
MCYG_05692
Microsporum canis
MCYG_05692
N
0.000
MGG_09948
Magnaporthe oryzae
MGG_09948
N
0.000
MGYG_02786
Microsporum gypseum
MGYG_02786
N
0.000
NFIA_003540
Neosartorya fischeri
CADNFIAG00000551
N
0.000
Pa_1_2890
Podospora anserina
Pa_1_2890
N
0.000
PMAA_016150
Penicillium marneffei
PMAA_016150
N
0.000
PredSwiss_ASS2010_1021.1
Pneumocystis carinii
PredSwiss_ASS2010_1021.1
N
0.000
PredSwiss_CON3041.3
Pneumocystis carinii
PredSwiss_CON3041.3
N
0.000
PTRG_10702
Pyrenophora tritici repentis
PTRG_10702
N
0.000
SJAG_00225
Schizosaccharomyces japonicus
SJAG_00225
N
0.000
SNOG_09827
Stagonospora nodorum
SNOG_09827
N
0.000
SOCG_04535
Schizosaccharomyces octosporus
SOCG_04535
N
0.000
SPAP8A3.06
Schizosaccharomyces pombe
SPAP8A3.06
N
0.000
SPOG_03722
Schizosaccharomyces cryophilus
SPOG_03722
N
0.000
SS1G_04229
Sclerotinia sclerotiorum
SS1G_04229
N
0.000
TERG_06877
Trichophyton rubrum
TERG_06877
N
0.000
TESG_04620
Trichophyton tonsurans
TESG_04620
N
0.000
VDAG_04200
Verticillium dahliae
VDAG_04200
N
0.000
VDBG_04657
Verticillium albo atrum
VDBG_04657
N
0.000