GA25725-RB (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0247102 T44395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M110_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		0.971
aret
M003_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		0.971
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0291898 RRM 365 434
FBpp0291898 RRM 452 518
FBpp0291898 RRM 735 805
FBpp0291899 RRM 142 211
FBpp0291899 RRM 229 296
FBpp0291899 RRM 512 582

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.000
30169.m006527 Ricinus communis 30169.m006527 I 0.000
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.000
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.000
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.000
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.000
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.000
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.000
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.000
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.000
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.000
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.000
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.000
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.000
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.000
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.000
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.000
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.000
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.000
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.000
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.000
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.000
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.000
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.000
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.000
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.000
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.000
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.000
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.000
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.000
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.000
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.000
MDP0000269393 Malus x domestica MDP0000269393 I 0.000
MDP0000796160 Malus x domestica MDP0000796160 I 0.000
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.000
Medtr7g010320 Medicago truncatula Medtr7g010320 N 0.000
mgf001230m Mimulus guttatus mgf001230m I 0.000
mgf005649m Mimulus guttatus mgf005649m I 0.000
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.000
PK14390.1 Cannabis sativa PK14390.1 I 0.000
ppa004961m Prunus persica ppa004961m I 0.000
ppa005791m Prunus persica ppa005791m I 0.000
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.000
SB01G034060 Sorghum bicolor Sb01g034060 I 0.000
SB03G028150 Sorghum bicolor Sb03g028150 I 0.000
SB07G021250 Sorghum bicolor Sb07g021250 I 0.000
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.000
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.000