GA25725-RB (Drosophila pseudoobscura)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0247102 T44395_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
aret
M110_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00114 		0.971
aret
M003_0.6 		Drosophila melanogaster UKUKUGU RNAcompete
Ray et al.(2013)
RNCMPT00003 		0.971
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0291898 RRM 365 434
FBpp0291898 RRM 452 518
FBpp0291898 RRM 735 805
FBpp0291899 RRM 142 211
FBpp0291899 RRM 229 296
FBpp0291899 RRM 512 582

Links

Other RRM family RBPs
Other Drosophila pseudoobscura RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB00394.1 Alternaria brassicicola AB00394.1 N 0.000
ACLA_061920 Aspergillus clavatus CADACLAG00005985 N 0.000
AFLA_090330 Aspergillus flavus CADAFLAG00008718 N 0.000
AFUA_3G02380 Aspergillus fumigatus CADAFUAG00000282 N 0.000
An01g01060 Aspergillus niger CADANGAG00000104 N 0.000
ANIA_09362 Aspergillus nidulans CADANIAG00001149 N 0.000
AO090120000034 Aspergillus oryzae CADAORAG00011213 N 0.000
ATEG_07467 Aspergillus terreus CADATEAG00003016 N 0.000
BC1G_10530 Botrytis cinerea BC1G_10530 N 0.000
BDBG_04724 Blastomyces dermatitidis BDBG_04724 N 0.000
CHGG_01857 Chaetomium globosum CHGG_01857 N 0.000
CIMG_04462 Coccidioides immitis CIMG_04462 N 0.000
CPSG_06303 Coccidioides posadasii CPSG_06303 N 0.000
EAT83092.1 Phaeosphaeria nodorum EAT83092.1 N 0.000
estExt_fgenesh3_kg.C_70195 Neurospora discreta estExt_fgenesh3_kg.C_70195 N 0.000
estExt_Genewise1.C_270092 Cochliobolus heterostrophus C5 estExt_Genewise1.C_270092 N 0.000
estExt_Genewise1.C_chr_10003 Mycosphaerella graminicola estExt_Genewise1.C_chr_10003 N 0.000
estExt_Genewise1.C_sca_3_chr4_2_00935 Nectria haematococca estExt_Genewise1.C_sca_3_chr4_2_00935 N 0.000
estExt_Genewise1Plus.C_50321 Neurospora tetrasperma estExt_Genewise1Plus.C_50321 N 0.000
estExt_Genewise1Plus.C_51141 Cryphonectria parasitica estExt_Genewise1Plus.C_51141 N 0.000
fgenesh1_pg.00771_#_421 Aspergillus carbonarius fgenesh1_pg.00771_#_421 N 0.000
fgenesh1_pg.C_scaffold_49000019 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_49000019 N 0.000
FGSG_06860 Fusarium graminearum FGSG_06860 N 0.000
FOXG_01966 Fusarium oxysporum FOXG_01966 N 0.000
FVEG_05126 Fusarium verticillioides FVEG_05126 N 0.000
GLRG_01478 Colletotrichum graminicola GLRG_01478 N 0.000
GSTUMT00005341001 Tuber melanosporum GSTUMT00005341001 N 0.000
MCYG_05692 Microsporum canis MCYG_05692 N 0.000
MGG_09948 Magnaporthe oryzae MGG_09948 N 0.000
MGYG_02786 Microsporum gypseum MGYG_02786 N 0.000
NFIA_003540 Neosartorya fischeri CADNFIAG00000551 N 0.000
Pa_1_2890 Podospora anserina Pa_1_2890 N 0.000
PMAA_016150 Penicillium marneffei PMAA_016150 N 0.000
PredSwiss_ASS2010_1021.1 Pneumocystis carinii PredSwiss_ASS2010_1021.1 N 0.000
PredSwiss_CON3041.3 Pneumocystis carinii PredSwiss_CON3041.3 N 0.000
PTRG_10702 Pyrenophora tritici repentis PTRG_10702 N 0.000
SJAG_00225 Schizosaccharomyces japonicus SJAG_00225 N 0.000
SNOG_09827 Stagonospora nodorum SNOG_09827 N 0.000
SOCG_04535 Schizosaccharomyces octosporus SOCG_04535 N 0.000
SPAP8A3.06 Schizosaccharomyces pombe SPAP8A3.06 N 0.000
SPOG_03722 Schizosaccharomyces cryophilus SPOG_03722 N 0.000
SS1G_04229 Sclerotinia sclerotiorum SS1G_04229 N 0.000
TERG_06877 Trichophyton rubrum TERG_06877 N 0.000
TESG_04620 Trichophyton tonsurans TESG_04620 N 0.000
VDAG_04200 Verticillium dahliae VDAG_04200 N 0.000
VDBG_04657 Verticillium albo atrum VDBG_04657 N 0.000