CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA25725-RB
(
Drosophila pseudoobscura
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0247102
T44395_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
aret
M110_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00114
0.971
aret
M003_0.6
Drosophila melanogaster
UKUKUGU
RNAcompete
Ray et al.(2013)
RNCMPT00003
0.971
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0291898
RRM
365
434
MFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALKAQDALHNVKTLAGMY
FBpp0291898
RRM
452
518
LFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIME
FBpp0291898
RRM
735
805
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
FBpp0291899
RRM
142
211
MFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISKGCCFVTFFTRRAALKAQDALHNVKTLAGMY
FBpp0291899
RRM
229
296
LFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEG
FBpp0291899
RRM
512
582
LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK
Links
Other
RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
17 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
28649.m000223
Ricinus communis
28649.m000223
I
0.000
30169.m006527
Ricinus communis
30169.m006527
I
0.000
A9PHS8_POPTR
Populus trichocarpa
POPTR_0004s12210
I
0.000
ATPTB2
Arabidopsis thaliana
AT5G53180-TAIR-G
I
0.000
B9IK00_POPTR
Populus trichocarpa
POPTR_0017s12160
I
0.000
BGIOSIBCE002789
Oryza indica
BGIOSIBCE002789
N
0.000
BGIOSIBCE011312
Oryza indica
BGIOSIBCE011312
I
0.000
BRADI1G61200
Brachypodium distachyon
BRADI1G61200
I
0.000
BRADI2G43760
Brachypodium distachyon
BRADI2G43760
I
0.000
BRADI3G36770
Brachypodium distachyon
BRADI3G36770
I
0.000
cassava29285.valid.m1
Manihot esculenta
cassava29285.valid.m1
I
0.000
cassava3019.m1
Manihot esculenta
cassava3019.m1
I
0.000
cassava7218.valid.m1
Manihot esculenta
cassava7218.valid.m1
I
0.000
cassava7219.valid.m1
Manihot esculenta
cassava7219.valid.m1
I
0.000
chr1.CM0141.270.nc
Lotus japonicus
chr1.CM0141.270.nc
I
0.000
Cucsa.202010
Cucumis sativus
Cucsa.202010
I
0.000
e_gw1.30.357.1
Selaginella moellendorfii
e_gw1.30.357.1
I
0.000
e_gw1.81.40.1
Physcomitrella patens
e_gw1.81.40.1
D
0.000
Glyma04g41660.1
Glycine max
Glyma04g41660.1
I
0.000
Glyma06g13130.1
Glycine max
Glyma06g13130.1
I
0.000
Glyma09g37080.1
Glycine max
Glyma09g37080.1
I
0.000
Glyma13g08170.1
Glycine max
Glyma13g08170.1
I
0.000
Glyma14g30490.1
Glycine max
Glyma14g30490.1
I
0.000
Glyma18g49580.1
Glycine max
Glyma18g49580.1
I
0.000
GRMZM2G058039
Zea mays
GRMZM2G058039
I
0.000
GRMZM2G178169
Zea mays
GRMZM2G178169
I
0.000
GSVIVG00011438001
Vitis vinifera
GSVIVG00011438001
I
0.000
GSVIVG00028703001
Vitis vinifera
GSVIVG00028703001
I
0.000
gw1.326.8.1
Physcomitrella patens
gw1.326.8.1
I
0.000
LOC_Os01g43170
Oryza sativa
LOC_Os01g43170
I
0.000
LOC_Os03g25980
Oryza sativa
LOC_Os03g25980
I
0.000
LOC_Os08g33830
Oryza sativa
LOC_Os08g33830
I
0.000
MDP0000269393
Malus x domestica
MDP0000269393
I
0.000
MDP0000796160
Malus x domestica
MDP0000796160
I
0.000
Medtr3g124540
Medicago truncatula
Medtr3g124540
I
0.000
Medtr7g010320
Medicago truncatula
Medtr7g010320
N
0.000
mgf001230m
Mimulus guttatus
mgf001230m
I
0.000
mgf005649m
Mimulus guttatus
mgf005649m
I
0.000
PDK_20s1513061g004
Phoenix dactylifera
PDK_20s1513061g004
I
0.000
PK14390.1
Cannabis sativa
PK14390.1
I
0.000
ppa004961m
Prunus persica
ppa004961m
I
0.000
ppa005791m
Prunus persica
ppa005791m
I
0.000
PTB
Arabidopsis thaliana
AT3G01150-TAIR-G
I
0.000
SB01G034060
Sorghum bicolor
Sb01g034060
I
0.000
SB03G028150
Sorghum bicolor
Sb03g028150
I
0.000
SB07G021250
Sorghum bicolor
Sb07g021250
I
0.000
XM_002865910.1
Arabidopsis lyrata
fgenesh2_kg.8__1206__AT5G53180.1
I
0.000
XM_002884247.1
Arabidopsis lyrata
scaffold_300118.1
I
0.000