LOC_Os02g40900 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os02g40900 T44967_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.704
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os02g40900.1 RRM 128 198

Links

Other RRM family RBPs
Other Oryza sativa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29680.m001693 Ricinus communis 29680.m001693 I 0.873
A2VDB3 Xenopus laevis A2VDB3 I 0.704
AAI29698 Xenopus laevis AAI29698 I 0.704
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.704
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.831
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.831
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.845
BGIOSIBCE007866 Oryza indica BGIOSIBCE007866 I 0.986
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.831
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.831
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.958
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.873
cassava22670.valid.m1 Manihot esculenta cassava22670.valid.m1 N 0.722
chr5.LjT18P14.100.nd Lotus japonicus chr5.LjT18P14.100.nd N 0.708
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.845
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.704
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.704
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.704
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.718
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.718
e_gw1.156.67.1 Physcomitrella patens e_gw1.156.67.1 I 0.831
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.873
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.831
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.873
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.845
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.901
GSPATP00035306001 Paramecium tetraurelia GSPATP00035306001 N 0.718
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.873
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.859
gw1.0.1780.1 Selaginella moellendorfii gw1.0.1780.1 I 0.792
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.817
LOC100051102 Equus caballus ENSECAG00000018215 I 0.704
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.831
MDP0000283678 Malus x domestica MDP0000283678 I 0.859
MDP0000320908 Malus x domestica MDP0000320908 I 0.859
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.845
mgf008981m Mimulus guttatus mgf008981m I 0.750
mgf018525m Mimulus guttatus mgf018525m I 0.746
mgf021739m Mimulus guttatus mgf021739m I 0.831
NCLIV_021850 Neospora caninum NCLIV_021850 N 0.718
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.887
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.873
PDK_20s1329112g001 Phoenix dactylifera PDK_20s1329112g001 N 0.803
PK16312.1 Cannabis sativa PK16312.1 I 0.859
ppa010477m Prunus persica ppa010477m I 0.859
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.704
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.704
RBM42 Homo sapiens ENSG00000126254 D 0.704
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.704
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.704
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.704
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.704
RBM42 Canis familiaris ENSCAFG00000006925 I 0.704
RBM42 Microcebus murinus ENSMICG00000009880 I 0.704
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.704
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.704
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.704
RBM42 Sus scrofa ENSSSCG00000002905 I 0.704
RBM42 Sorex araneus ENSSARG00000010724 I 0.704
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.704
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.704
RBM42 Procavia capensis ENSPCAG00000013053 I 0.704
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.704
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.704
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.704
Rbm42 Mus musculus ENSMUSG00000036733 I 0.704
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.704
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.704
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.845
SB04G026430 Sorghum bicolor Sb04g026430 I 0.901
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.718
TGGT1_017860 Toxoplasma gondii TGGT1_017860 N 0.718
TGME49_003080 Toxoplasma gondii TGME49_003080 N 0.718
TGVEG_046310 Toxoplasma gondii TGVEG_046310 N 0.718
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.831