CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw.92.129.1
(
Nematostella vectensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw.92.129.1
T50261_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.718
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.704
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw.92.129.1
RRM
29
99
IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMNGKYIGSRPVK
Links
Other
RRM
family RBPs
Other
Nematostella vectensis
RBPs
52 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R007421
Ailuropoda melanoleuca
Ame_R007421
I
0.000
B7NZE2_RABIT
Oryctolagus cuniculus
ENSOCUG00000003551
I
0.000
CELF3
Sus scrofa
ENSSSCG00000006618
I
0.000
CELF3
Pan troglodytes
ENSPTRG00000001293
I
0.000
CELF3
Ochotona princeps
ENSOPRG00000011130
I
0.000
Celf3
Mus musculus
ENSMUSG00000028137
I
0.000
CELF3
Monodelphis domestica
ENSMODG00000018897
I
0.000
CELF3
Loxodonta africana
ENSLAFG00000030147
I
0.000
CELF3
Gasterosteus aculeatus
ENSGACG00000011707
I
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
CELF3
Equus caballus
ENSECAG00000020365
I
0.000
CELF3
Cavia porcellus
ENSCPOG00000003539
I
0.000
CELF3
Canis familiaris
ENSCAFG00000012794
I
0.000
CELF3
Callithrix jacchus
ENSCJAG00000007857
I
0.000
CELF3_BOVIN
Bos taurus
ENSBTAG00000019131
I
0.000
D4A916_RAT
Rattus norvegicus
ENSRNOG00000020875
I
0.000
ENSGGOG00000021973
Gorilla gorilla
ENSGGOG00000021973
I
0.000
ENSPPYG00000000859
Pongo pygmaeus
ENSPPYG00000000859
N
0.000