Ame_R000626 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R000626 T55480_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		1.000
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.814
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.814
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.814
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R000626 RRM 11 80
Ame_R000626 RRM 102 171

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

224 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL007436 Aedes aegypti AAEL007436 N 0.000
AAEL007449 Aedes aegypti AAEL007449 N 0.000
AAEL801228 Aedes aegypti AAEL007447 N 0.000
AGAP007802 Anopheles gambiae AGAP007802 N 0.000
AGAP007808 Anopheles gambiae AGAP007808 N 0.000
amel4_ncbi_hmm5263 Apis mellifera amel4_ncbi_hmm5263 N 0.000
BGIBMGA005589 Bombyx mori BGIBMGA005589 N 0.000
CPIJ010645 Culex quinquefasciatus CPIJ010645 N 0.000
CPIJ011735 Culex quinquefasciatus CPIJ011735 N 0.000
CpipJ_CPIJ010645 Culex pipiens CpipJ_CPIJ010645 N 0.000
CpipJ_CPIJ011735 Culex pipiens CpipJ_CPIJ011735 N 0.000
DGIL_AUG5s11561g1t1 Acyrtosiphon pisum DGIL_AUG5s11561g1t1 N 0.000
estExt_fgenesh2_pg.C_4930048 Branchiostoma floridae estExt_fgenesh2_pg.C_4930048 N 0.000
estExt_fgenesh2_pg.C_5340004 Branchiostoma floridae estExt_fgenesh2_pg.C_5340004 N 0.000
GD24374 Drosophila simulans FBgn0195715 N 0.000
GE14506 Drosophila yakuba FBgn0232110 N 0.000
GF19039 Drosophila ananassae FBgn0096051 N 0.000
GG16439 Drosophila erecta FBgn0108670 N 0.000
GH23931 Drosophila grimshawi FBgn0131388 N 0.000
GJ14351 Drosophila virilis FBgn0201564 N 0.000
GK13697 Drosophila willistoni FBgn0215705 N 0.000
GL18179 Drosophila persimilis FBgn0155782 N 0.000
GM26772 Drosophila sechellia FBgn0181625 N 0.000
gw Drosophila melanogaster FBgn0051992 N 0.000
PASA_GEN_0100279 Daphnia pulex PASA_GEN_0100279 N 0.000