MDP0000299639 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000299639 T57600_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000299639 RRM 263 332

Links

Other RRM family RBPs
Other Malus x domestica RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29005.m000257 Ricinus communis 29005.m000257 N 0.843
29876.m000260 Ricinus communis 29876.m000260 N 0.714
ALY4 Arabidopsis thaliana AT5G37720-TAIR-G N 0.814
AT1G66260 Arabidopsis thaliana AT1G66260-TAIR-G N 0.771
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.714
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.714
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.714
B9GUT0_POPTR Populus trichocarpa POPTR_0017s02890 N 0.857
B9H3A7_POPTR Populus trichocarpa POPTR_0004s08540 N 0.829
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.700
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.700
BGIOSIBCE021374 Oryza indica BGIOSIBCE021374 N 0.714
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.771
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.757
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.729
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.886
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.886
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.886
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.729
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.729
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.900
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.900
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.700
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.900
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.900
Cucsa.137040 Cucumis sativus Cucsa.137040 N 0.900
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.729
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.714
Glyma11g33670.1 Glycine max Glyma11g33670.1 N 0.886
Glyma18g04530.1 Glycine max Glyma18g04530.1 N 0.871
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.757
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.729
GSVIVG00030785001 Vitis vinifera GSVIVG00030785001 N 0.886
LOC_Os06g14470 Oryza sativa LOC_Os06g14470 N 0.714
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.771
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.700
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.700
MDP0000119945 Malus x domestica MDP0000119945 N 0.700
MDP0000153894 Malus x domestica MDP0000153894 N 0.700
MDP0000202749 Malus x domestica MDP0000202749 N 0.957
MDP0000251188 Malus x domestica MDP0000251188 N 0.700
MDP0000275263 Malus x domestica MDP0000275263 N 1.000
Medtr3g087640 Medicago truncatula Medtr3g087640 N 0.871
Medtr3g087650 Medicago truncatula Medtr3g087650 N 0.871
mgf000319m Mimulus guttatus mgf000319m N 0.814
mgf010207m Mimulus guttatus mgf010207m N 0.714
PK16300.1 Cannabis sativa PK16300.1 N 0.900
ppa009623m Prunus persica ppa009623m N 0.957
ppa010358m Prunus persica ppa010358m N 0.714
SB01G039330 Sorghum bicolor Sb01g039330 N 0.700
SB07G020860 Sorghum bicolor Sb07g020860 N 0.757
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.714
XM_002870512.1 Arabidopsis lyrata fgenesh2_kg.7__3183__AT5G37720.2 N 0.814
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.714
XM_002888447.1 Arabidopsis lyrata fgenesh2_kg.2__861__AT1G66260.1 N 0.757