cassava36931.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava36931.valid.m1 T00848_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava36931.valid.m1 CCCH ZF 191 216
cassava36931.valid.m1 RRM 359 419

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.713
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.782
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.793
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.713
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.713
PK20504.1 Cannabis sativa PK20504.1 N 0.828
PK01281.1 Cannabis sativa PK01281.1 N 0.770
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.724
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.701
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.701
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.701
Glyma18g09020.1 Glycine max Glyma18g09020.1 N 0.736
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.747
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.701
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.701
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.747
MDP0000243086 Malus x domestica MDP0000243086 N 0.713
MDP0000120231 Malus x domestica MDP0000120231 N 0.701
MDP0000214614 Malus x domestica MDP0000214614 N 0.839
MDP0000906147 Malus x domestica MDP0000906147 N 0.874
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.724
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.816
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.816
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.724
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.805
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.724
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.713
Medtr3g077080 Medicago truncatula Medtr3g077080 N 0.701
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.736
mgf003557m Mimulus guttatus mgf003557m N 0.736
mgf002273m Mimulus guttatus mgf002273m N 0.701
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.931
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.701
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.736
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.828
ppa003564m Prunus persica ppa003564m N 0.839
ppa019338m Prunus persica ppa019338m N 0.828
ppa002413m Prunus persica ppa002413m N 0.701
ppa023263m Prunus persica ppa023263m N 0.713
29223.m000023 Ricinus communis 29223.m000023 N 0.851
27613.m000645 Ricinus communis 27613.m000645 N 0.793
30169.m006471 Ricinus communis 30169.m006471 N 0.724
SB08G001980 Sorghum bicolor Sb08g001980 N 0.701
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.724
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.724
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.805
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.701