CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

ZFP36 *(Gasterosteus aculeatus)* CCCH ZF
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00642 (zf-CCCH)	IPR000571	ENSGACG00000008344	T02689_0.6	Ensembl (2011-Oct-26)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
ZFP36 M350_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 951_12324455	0.741
ZFP36 M269_0.6	Homo sapiens		UUAUUUAWW	SELEX Cook et al.(2011) 221_12324455	0.741
ZFP36 M268_0.6	Homo sapiens	Sequence logo not available	AUUUA	RIP-chip Cook et al.(2011) 194_18256032.1	0.741
ZFP36 M267_0.6	Homo sapiens	Sequence logo not available	UUAUUUAUU	RIP-chip Cook et al.(2011) 194_18256032	0.741
ZFP36 M266_0.6	Homo sapiens	Sequence logo not available	UUGUGS	RIP-chip Cook et al.(2011) 193_18367721.3	0.741
ZFP36 M265_0.6	Homo sapiens	Sequence logo not available	CUUGU	RIP-chip Cook et al.(2011) 193_18367721.2	0.741
ZFP36 M264_0.6	Homo sapiens	Sequence logo not available	HCYUBY	RIP-chip Cook et al.(2011) 193_18367721.1	0.741
ZFP36 M263_0.6	Homo sapiens	Sequence logo not available	AAUAA	RIP-chip Cook et al.(2011) 193_18367721	0.741
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSGACP00000011033	CCCH ZF	61	87	YKTELCRSFSESGLCKYGGKCQFAHGL
ENSGACP00000011033	CCCH ZF	99	125	YKTEPCRTFHTIGFCPYGIRCHFVHNN

Links
Other CCCH ZF family RBPs
Other *Gasterosteus aculeatus* RBPs

148 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
TIAL1	Myotis lucifugus	ENSMLUG00000004645	N	0.000
TIAL1	Otolemur garnettii	ENSOGAG00000011417	N	0.000