ENSORLG00000005419 (Oryzias latipes)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSORLG00000005419 T03131_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MBNL1
M320_0.6 		Homo sapiens YYYGCUKY; YGCY SELEX
Cook et al.(2011)
669_20071745 		0.860
MBNL1
M037_0.6 		Homo sapiens GCUUGC RNAcompete
Ray et al.(2013)
RNCMPT00038 		0.860
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006825 CCCH ZF 16 40
ENSORLP00000006825 CCCH ZF 57 72
ENSORLP00000006825 CCCH ZF 178 204
ENSORLP00000006825 CCCH ZF 216 238

Links

Other CCCH ZF family RBPs
Other Oryzias latipes RBPs

111 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.000
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.000
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.000
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.000
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.000
BRADI3G36320 Brachypodium distachyon BRADI3G36320 N 0.000
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.000
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.000
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.000
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.000
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.000
Glyma02g10380.1 Glycine max Glyma02g10380.1 N 0.000
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.000
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.000
MDP0000275263 Malus x domestica MDP0000275263 N 0.000
MDP0000119945 Malus x domestica MDP0000119945 N 0.000
MDP0000153894 Malus x domestica MDP0000153894 N 0.000
MDP0000202749 Malus x domestica MDP0000202749 N 0.000
MDP0000251188 Malus x domestica MDP0000251188 N 0.000
MDP0000299639 Malus x domestica MDP0000299639 N 0.000
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.000
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.000
cassava6246.valid.m1 Manihot esculenta cassava6246.valid.m1 N 0.000
cassava9472.m1 Manihot esculenta cassava9472.m1 N 0.000
cassava9473.m1 Manihot esculenta cassava9473.m1 N 0.000
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.000
cassava30012.valid.m1 Manihot esculenta cassava30012.valid.m1 N 0.000
cassava30011.valid.m1 Manihot esculenta cassava30011.valid.m1 N 0.000
cassava6245.valid.m1 Manihot esculenta cassava6245.valid.m1 N 0.000
cassava30010.valid.m1 Manihot esculenta cassava30010.valid.m1 N 0.000
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.000
mgf010207m Mimulus guttatus mgf010207m N 0.000
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.000
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.000
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.000
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.000
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.000
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.000
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.000
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.000
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.000
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.000
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.000
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.000
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.000
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.000
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.000
ppa009623m Prunus persica ppa009623m N 0.000
ppa010358m Prunus persica ppa010358m N 0.000
29876.m000260 Ricinus communis 29876.m000260 N 0.000
29585.m000588 Ricinus communis 29585.m000588 N 0.000
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.000
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.000
SB02G007020 Sorghum bicolor Sb02g007020 N 0.000
SB01G039330 Sorghum bicolor Sb01g039330 N 0.000
SB07G020860 Sorghum bicolor Sb07g020860 N 0.000
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.000
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.000
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.000
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.000
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.000
GRMZM2G140352 Zea mays GRMZM2G140352 N 0.000
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.000