CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSORLG00000005419
(
Oryzias latipes
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSORLG00000005419
T03131_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
MBNL1
M320_0.6
Homo sapiens
YYYGCUKY; YGCY
SELEX
Cook et al.(2011)
669_20071745
0.860
MBNL1
M037_0.6
Homo sapiens
GCUUGC
RNAcompete
Ray et al.(2013)
RNCMPT00038
0.860
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000006825
CCCH ZF
16
40
LEVCRQFQRGTCSRSDEECKFAHPP
ENSORLP00000006825
CCCH ZF
57
72
LKGRCTRENCKYLHPP
ENSORLP00000006825
CCCH ZF
178
204
DKLEVCREFQRGNCARGETDCRFAHPS
ENSORLP00000006825
CCCH ZF
216
238
VTVCMDYIKSRCSREKCKYFHPP
Links
Other
CCCH ZF
family RBPs
Other
Oryzias latipes
RBPs
111 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002864614.1
Arabidopsis lyrata
fgenesh2_kg.8__1946__AT5G59950.1
N
0.000
XM_002873013.1
Arabidopsis lyrata
fgenesh2_kg.6__165__AT5G02530.1
N
0.000
AT5G59950
Arabidopsis thaliana
AT5G59950-TAIR-G
N
0.000
AT5G02530
Arabidopsis thaliana
AT5G02530-TAIR-G
N
0.000
BRADI1G66430
Brachypodium distachyon
BRADI1G66430
N
0.000
BRADI3G36320
Brachypodium distachyon
BRADI3G36320
N
0.000
BRADI4G45380
Brachypodium distachyon
BRADI4G45380
N
0.000
Cucsa.172290
Cucumis sativus
Cucsa.172290
N
0.000
Cucsa.213420
Cucumis sativus
Cucsa.213420
N
0.000
Glyma13g40930.1
Glycine max
Glyma13g40930.1
N
0.000
Glyma12g07010.1
Glycine max
Glyma12g07010.1
N
0.000
Glyma02g10380.1
Glycine max
Glyma02g10380.1
N
0.000
Glyma11g15040.1
Glycine max
Glyma11g15040.1
N
0.000
LjT41B11.50.nd
Lotus japonicus
LjT41B11.50.nd
N
0.000
MDP0000275263
Malus x domestica
MDP0000275263
N
0.000
MDP0000119945
Malus x domestica
MDP0000119945
N
0.000
MDP0000153894
Malus x domestica
MDP0000153894
N
0.000
MDP0000202749
Malus x domestica
MDP0000202749
N
0.000
MDP0000251188
Malus x domestica
MDP0000251188
N
0.000
MDP0000299639
Malus x domestica
MDP0000299639
N
0.000
cassava37746.valid.m1
Manihot esculenta
cassava37746.valid.m1
N
0.000
cassava35480.valid.m1
Manihot esculenta
cassava35480.valid.m1
N
0.000
cassava6246.valid.m1
Manihot esculenta
cassava6246.valid.m1
N
0.000
cassava9472.m1
Manihot esculenta
cassava9472.m1
N
0.000
cassava9473.m1
Manihot esculenta
cassava9473.m1
N
0.000
cassava37747.valid.m1
Manihot esculenta
cassava37747.valid.m1
N
0.000
cassava30012.valid.m1
Manihot esculenta
cassava30012.valid.m1
N
0.000
cassava30011.valid.m1
Manihot esculenta
cassava30011.valid.m1
N
0.000
cassava6245.valid.m1
Manihot esculenta
cassava6245.valid.m1
N
0.000
cassava30010.valid.m1
Manihot esculenta
cassava30010.valid.m1
N
0.000
Medtr4g078540
Medicago truncatula
Medtr4g078540
N
0.000
mgf010207m
Mimulus guttatus
mgf010207m
N
0.000
BGIOSIBCE007269
Oryza indica
BGIOSIBCE007269
N
0.000
BGIOSIBCE007271
Oryza indica
BGIOSIBCE007271
N
0.000
BGIOSIBCE010579
Oryza indica
BGIOSIBCE010579
N
0.000
BGIOSIBCE027930
Oryza indica
BGIOSIBCE027930
N
0.000
LOC_Os03g17010
Oryza sativa
LOC_Os03g17010
N
0.000
LOC_Os08g33120
Oryza sativa
LOC_Os08g33120
N
0.000
LOC_Os12g01010
Oryza sativa
LOC_Os12g01010
N
0.000
LOC_Os11g01020
Oryza sativa
LOC_Os11g01020
N
0.000
fgenesh1_pm.scaffold_57000010
Physcomitrella patens
fgenesh1_pm.scaffold_57000010
N
0.000
estExt_fgenesh1_pg.C_3900014
Physcomitrella patens
estExt_fgenesh1_pg.C_3900014
N
0.000
e_gw1.77.52.1
Physcomitrella patens
e_gw1.77.52.1
N
0.000
e_gw1.4.224.1
Physcomitrella patens
e_gw1.4.224.1
N
0.000
B9NB27_POPTR
Populus trichocarpa
POPTR_0016s11470
N
0.000
B9GER3_POPTR
Populus trichocarpa
POPTR_0001s24350
N
0.000
B9HTL2_POPTR
Populus trichocarpa
POPTR_0010s21510
N
0.000
ppa009623m
Prunus persica
ppa009623m
N
0.000
ppa010358m
Prunus persica
ppa010358m
N
0.000
29876.m000260
Ricinus communis
29876.m000260
N
0.000
29585.m000588
Ricinus communis
29585.m000588
N
0.000
gw1.1.189.1
Selaginella moellendorfii
gw1.1.189.1
N
0.000
e_gw1.0.323.1
Selaginella moellendorfii
e_gw1.0.323.1
N
0.000
SB02G007020
Sorghum bicolor
Sb02g007020
N
0.000
SB01G039330
Sorghum bicolor
Sb01g039330
N
0.000
SB07G020860
Sorghum bicolor
Sb07g020860
N
0.000
GSVIVG00025009001
Vitis vinifera
GSVIVG00025009001
N
0.000
GSVIVG00016588001
Vitis vinifera
GSVIVG00016588001
N
0.000
GRMZM2G171921
Zea mays
GRMZM2G171921
N
0.000
GRMZM2G166780
Zea mays
GRMZM2G166780
N
0.000
GRMZM2G157329
Zea mays
GRMZM2G157329
N
0.000
GRMZM2G140352
Zea mays
GRMZM2G140352
N
0.000
GRMZM2G019251
Zea mays
GRMZM2G019251
N
0.000