CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Tarsius syrichta
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTSYG00000009996
T03567_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000009178
CCCH ZF
1
19
YFMHGVCKEGDNCRYSHDL
ENSTSYP00000009178
CCCH ZF
23
43
PYGVVCKYFQRGYCIYGDRCX
ENSTSYP00000009178
CCCH ZF
147
172
TKKQLCPYAAVGECRYGENCVYLHGD
ENSTSYP00000009178
CCCH ZF
305
330
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Tarsius syrichta
RBPs
33 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.929
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.779
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.731
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.938
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.900
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.875
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.929
MKRN1
Felis catus
ENSFCAG00000013043
N
0.938
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.760
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.865
MKRN1
Homo sapiens
ENSG00000133606
N
0.907
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.856
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.721
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.918
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.769
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.796
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.846
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.769
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.907
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.808
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.918
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.989
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.856
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.928
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.779
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.856
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.846
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.968
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.875
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.776
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.875
AAH74368
Xenopus laevis
AAH74368
N
0.709
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.709