CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100065893
(
Equus caballus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSECAG00000017929
T02533_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000015649
CCCH ZF
1
20
RYFMHGVCKEGDNCRYSHDL
ENSECAP00000015649
CCCH ZF
24
49
PYGVVCKYFQRGYCIYGDRCRYEHSK
ENSECAP00000015649
CCCH ZF
148
173
TKKQLCPYAAVGECRYGENCVYLHGD
ENSECAP00000015649
CCCH ZF
306
331
NKACRYFDEGRGSCPFGGNCFYKHAY
Links
Other
CCCH ZF
family RBPs
Other
Equus caballus
RBPs
36 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
1.000
MKRN1
Felis catus
ENSFCAG00000013043
N
0.990
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.990
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.990
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.990
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.980
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.970
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.959
MKRN1
Homo sapiens
ENSG00000133606
N
0.959
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.942
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.942
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.942
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.933
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.929
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.923
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.923
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.918
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.913
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.909
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.908
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.904
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.875
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.857
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.837
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.837
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.837
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.827
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.827
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.817
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.788
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.779
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.767
AAH74368
Xenopus laevis
AAH74368
N
0.767
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.752
mkrn1
Danio rerio
ENSDARG00000041665
N
0.726
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.708