CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH74368
(
Xenopus laevis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
AAH74368
T06697_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH74368
CCCH ZF
36
60
RHVTCRYFIHGVCKEGINCRYSHDL
AAH74368
CCCH ZF
68
89
ICRYFQRGCCAYGDRCRYEHNK
AAH74368
CCCH ZF
175
200
LKKQLCPYAAMGECRYGENCVYLHGD
AAH74368
CCCH ZF
333
356
SKSCRYFDEGRGTCPFGGNCFYRH
Links
Other
CCCH ZF
family RBPs
Other
Xenopus laevis
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Q6GLT5
Xenopus laevis
Q6GLT5
N
1.000
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.840
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.840
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.830
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.820
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.802
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.792
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.788
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.788
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.788
MKRN1
Homo sapiens
ENSG00000133606
N
0.788
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.788
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.788
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.788
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.788
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.779
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.779
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.779
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.779
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.777
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.767
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.767
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.767
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.767
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.765
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.757
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.757
MKRN1
Felis catus
ENSFCAG00000013043
N
0.757
mkrn1
Danio rerio
ENSDARG00000041665
N
0.755
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.728
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.724
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.723
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.709
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.709
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.706