CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Taeniopygia guttata
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSTGUG00000011669
T03469_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTGUP00000012028
CCCH ZF
1
20
RYFMHGVCKEGDNCRYSHDL
ENSTGUP00000012028
CCCH ZF
28
49
VCRYYQRGCCAYGDHCRYEHTK
ENSTGUP00000012028
CCCH ZF
147
172
MKKELCPYAALGECRYGENCVYIHGD
ENSTGUP00000012028
CCCH ZF
305
330
NKPCRYFDEGRGSCPFGGNCFYKHEY
Links
Other
CCCH ZF
family RBPs
Other
Taeniopygia guttata
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.979
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.910
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.890
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.880
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.880
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.854
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.837
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.837
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.837
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.827
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.827
MKRN1
Felis catus
ENSFCAG00000013043
N
0.827
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.827
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.820
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.806
MKRN1
Homo sapiens
ENSG00000133606
N
0.806
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.798
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.792
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.788
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.788
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.788
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.788
AAH74368
Xenopus laevis
AAH74368
N
0.788
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.788
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.786
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.779
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.779
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.776
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.760
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.758
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.745
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.733
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.725
mkrn1
Danio rerio
ENSDARG00000041665
N
0.708