CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Callithrix jacchus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSCJAG00000004068
T02346_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000007382
CCCH ZF
57
82
TKQVTCTYFMHGAYKEGDNCRYSHEL
ENSCJAP00000007382
CCCH ZF
88
111
GVVCKYFHQGCCIYGDRCRYEHSK
ENSCJAP00000007382
CCCH ZF
211
235
EKQLCPYAAVGQCRYGENCVYIHGD
ENSCJAP00000007382
CCCH ZF
368
393
NKACRYFDEGRGSCPFRENCFYKHVY
ENSCJAP00000024770
CCCH ZF
55
80
TKQVTCTYFMHGAYKEGDNCRYSHEL
ENSCJAP00000024770
CCCH ZF
86
109
GVVCKYFHQGCCIYGDRCRYEHSK
ENSCJAP00000024770
CCCH ZF
209
233
EKQLCPYAAVGQCRYGENCVYIHGD
ENSCJAP00000024770
CCCH ZF
366
391
NKACRYFDEGRGSCPFRENCFYKHVY
Links
Other
CCCH ZF
family RBPs
Other
Callithrix jacchus
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.846
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.846
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.846
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.846
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.846
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.837
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
0.837
MKRN1
Homo sapiens
ENSG00000133606
N
0.837
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.837
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.833
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.824
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.814
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.808
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.806
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.804
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.794
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.794
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.788
MKRN1
Felis catus
ENSFCAG00000013043
N
0.788
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.788
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.788
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.788
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.779
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.779
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.779
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.757
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.735
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.731
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.725
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.721
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.721
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.714
AAH74368
Xenopus laevis
AAH74368
N
0.706
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.706