A9P800_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0009s06730 T04050_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s06730.1 CCCH ZF 2 26
POPTR_0009s06730.1 CCCH ZF 32 55
POPTR_0009s06730.1 CCCH ZF 140 164
POPTR_0009s06730.1 CCCH ZF 298 322
POPTR_0009s06730.2 CCCH ZF 2 26
POPTR_0009s06730.2 CCCH ZF 32 55
POPTR_0009s06730.2 CCCH ZF 140 164
POPTR_0009s06730.2 CCCH ZF 298 322

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.810
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.842
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.800
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.782
PK11636.1 Cannabis sativa PK11636.1 N 0.812
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.810
Glyma15g42750.1 Glycine max Glyma15g42750.1 N 0.891
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.861
MDP0000170583 Malus x domestica MDP0000170583 N 0.860
MDP0000173577 Malus x domestica MDP0000173577 N 0.860
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.900
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.850
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.861
mgf018432m Mimulus guttatus mgf018432m N 0.822
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.762
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.762
ppa006435m Prunus persica ppa006435m N 0.850
30061.m000291 Ricinus communis 30061.m000291 N 0.890
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.752