rbm4b (Xenopus tropicalis)
CCHC ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC)
PF00076 (RRM_1) 		IPR001878
IPR000504 		ENSXETG00000026649 T07368_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM4
M109_0.6 		Homo sapiens GCGCGSG RNAcompete
Ray et al.(2013)
RNCMPT00113 		0.736
RBM4
M050_0.6 		Homo sapiens GCGCGSS RNAcompete
Ray et al.(2013)
RNCMPT00052 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000008271 RRM 4 66
ENSXETP00000008271 RRM 80 142
ENSXETP00000008271 CCHC ZF 160 177

Links

Other CCHC ZF,RRM family RBPs
Other Xenopus tropicalis RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002876682.1 Arabidopsis lyrata scaffold_503646.1 N 0.000
XM_002884635.1 Arabidopsis lyrata fgenesh2_kg.3__850__AT3G08505.2 N 0.000
AT3G08505 Arabidopsis thaliana AT3G08505-TAIR-G N 0.000
BRADI1G42720 Brachypodium distachyon BRADI1G42720 N 0.000
PK11636.1 Cannabis sativa PK11636.1 N 0.000
Cucsa.050240 Cucumis sativus Cucsa.050240 N 0.000
Glyma08g16340.1 Glycine max Glyma08g16340.1 N 0.000
MDP0000173577 Malus x domestica MDP0000173577 N 0.000
MDP0000170583 Malus x domestica MDP0000170583 N 0.000
cassava29658.valid.m1 Manihot esculenta cassava29658.valid.m1 N 0.000
cassava36555.valid.m1 Manihot esculenta cassava36555.valid.m1 N 0.000
Medtr3g030250 Medicago truncatula Medtr3g030250 N 0.000
mgf018432m Mimulus guttatus mgf018432m N 0.000
BGIOSIBCE021686 Oryza indica BGIOSIBCE021686 N 0.000
LOC_Os06g21390 Oryza sativa LOC_Os06g21390 N 0.000
A9P800_POPTR Populus trichocarpa POPTR_0009s06730 N 0.000
ppa006435m Prunus persica ppa006435m N 0.000
30061.m000291 Ricinus communis 30061.m000291 N 0.000
Sb10g012170 Sorghum bicolor Sb10g012170 N 0.000