ENSCJAG00000007407 (Callithrix jacchus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCJAG00000007407 T16780_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.901
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.901
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.861
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.861
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.833
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000013771 CSD 59 128

Links

Other CSD family RBPs
Other Callithrix jacchus RBPs

180 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.789
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.789
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.861
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.861
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.833
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.833
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.806
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.833
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.789
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.861
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.829
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.833
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.817
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.806
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.847
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.861
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.861
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.819
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.781
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.761
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.861
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.861
YBX2 Canis familiaris ENSCAFG00000016128 I 0.833
fgenesh1_pg.C_scaffold_1662000001 Capitella teleta fgenesh1_pg.C_scaffold_1662000001 N 0.000
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.803
CSDA Cavia porcellus ENSCPOG00000011329 I 0.861
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.861
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.833
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.861
ybx1 Danio rerio ENSDARG00000004757 I 0.861
YBX1 Dasypus novemcinctus ENSDNOG00000014149 I 0.000
Csda Dipodomys ordii ENSDORG00000009103 I 0.861
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.000
CSDA Echinops telfairi ENSETEG00000002557 I 0.861
YBX2 Echinops telfairi ENSETEG00000014271 I 0.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.861
LOC100065107 Equus caballus ENSECAG00000013777 I 0.861
LOC100072964 Equus caballus ENSECAG00000009996 I 0.833
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.847
LOC100067336 Equus caballus ENSECAG00000023592 I 0.861
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.861
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.833
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.861
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.861
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.861
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.806
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.861
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.833
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.861
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.819
YBX2 Homo sapiens ENSG00000006047 D 0.819
CSDA Homo sapiens ENSG00000060138 I 0.861
YB-1 Homo sapiens ENSG00000065978 D 0.861
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.775
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.775
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.803
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.861
CSDA Loxodonta africana ENSLAFG00000017247 I 0.861
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.833
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.861
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.847
CSDA Macaca mulatta ENSMMUG00000022469 I 0.861
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.833
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.861
YBX1 Microcebus murinus ENSMICG00000014984 I 0.861
CSDA Microcebus murinus ENSMICG00000004602 I 0.736
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
CSDA Monodelphis domestica ENSMODG00000018248 I 0.847
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.819
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.861
Ybx2 Mus musculus ENSMUSG00000018554 I 0.833
Ybx1 Mus musculus ENSMUSG00000028639 I 0.861
Csda Mus musculus ENSMUSG00000030189 I 0.861
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.833
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.857
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.789
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.861
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.833
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.861
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.861
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.806
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.861
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.819
CSDA Pan troglodytes ENSPTRG00000004681 I 0.861
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.861
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.861
YBX2 Procavia capensis ENSPCAG00000008019 I 0.833
CSDA Procavia capensis ENSPCAG00000001397 I 0.792
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.861
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.861
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.775
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.806
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.861
Csda Rattus norvegicus ENSRNOG00000005480 I 0.861
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.833
ENSRNOG00000023294 Rattus norvegicus ENSRNOG00000023294 N 0.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.847
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.833
YBX2 Sorex araneus ENSSARG00000000488 I 0.819
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.861
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.746
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.746
YBX2 Sus scrofa ENSSSCG00000017938 I 0.833
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.775
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.806
CSDA Sus scrofa ENSSSCG00000000633 I 0.861
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.861
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.861
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.861
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.792
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.861
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.792
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.789
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.833
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.861
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.775
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.000
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.861
P21574 Xenopus laevis P21574 I 0.847
AAI55915 Xenopus laevis AAI55915 I 0.847
AAI69704 Xenopus laevis AAI69704 I 0.847
ybx2-a Xenopus laevis AAI69706 D 0.847
CAA42778 Xenopus laevis CAA42778 I 0.861
P21573 Xenopus laevis P21573 I 0.861
P45441 Xenopus laevis P45441 I 0.833
AAI55914 Xenopus laevis AAI55914 I 0.833
AAI30161 Xenopus laevis AAI30161 I 0.861
AAI06324 Xenopus laevis AAI06324 I 0.861
AAH42217 Xenopus laevis AAH42217 I 0.861
AAH41191 Xenopus laevis AAH41191 I 0.861
AAA49924 Xenopus laevis AAA49924 I 0.833
AAA49716 Xenopus laevis AAA49716 I 0.847
AAA49715 Xenopus laevis AAA49715 I 0.861
Q00436 Xenopus laevis Q00436 I 0.861
csda Xenopus tropicalis ENSXETG00000016239 I 0.847
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.861