CSDA (Echinops telfairi)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSETEG00000002557 T16839_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		1.000
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		1.000
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.931
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.931
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.931
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.917
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000002089 CSD 2 72

Links

Other CSD family RBPs
Other Echinops telfairi RBPs

213 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.972
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.958
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 1.000
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 1.000
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.930
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.972
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.958
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 1.000
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.861
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.944
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.889
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.930
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.861
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 1.000
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.889
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 1.000
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.851
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.847
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 1.000
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.944
YBX2 Canis familiaris ENSCAFG00000016128 I 0.958
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.986
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.806
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.875
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.958
CSDA Cavia porcellus ENSCPOG00000011329 I 1.000
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 1.000
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 1.000
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.808
ybx1 Danio rerio ENSDARG00000004757 I 1.000
Csda Dipodomys ordii ENSDORG00000009103 I 1.000
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 1.000
LOC100072964 Equus caballus ENSECAG00000009996 I 0.958
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.986
LOC100065107 Equus caballus ENSECAG00000013777 I 1.000
LOC100067336 Equus caballus ENSECAG00000023592 I 1.000
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 1.000
CSDA Erinaceus europaeus ENSEEUG00000010415 I 1.000
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.944
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 1.000
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 1.000
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 1.000
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.849
CSDA Gorilla gorilla ENSGGOG00000001352 I 1.000
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.944
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.972
YBX2 Homo sapiens ENSG00000006047 D 0.944
YB-1 Homo sapiens ENSG00000065978 D 1.000
CSDA Homo sapiens ENSG00000060138 I 1.000
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.861
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.861
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.875
CSDA Loxodonta africana ENSLAFG00000017247 I 1.000
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.958
YBX1 Loxodonta africana ENSLAFG00000007597 I 1.000
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.958
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.986
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 1.000
CSDA Macaca mulatta ENSMMUG00000022469 I 1.000
YBX2 Macropus eugenii ENSMEUG00000006947 I 0.764
CSDA Macropus eugenii ENSMEUG00000002507 N 0.000
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 1.000
YBX1 Microcebus murinus ENSMICG00000014984 I 1.000
YBX1 Monodelphis domestica ENSMODG00000017214 I 1.000
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.944
CSDA Monodelphis domestica ENSMODG00000018248 I 0.986
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.944
Csda Mus musculus ENSMUSG00000030189 I 1.000
Ybx2 Mus musculus ENSMUSG00000018554 I 0.958
Ybx1 Mus musculus ENSMUSG00000028639 I 1.000
CSDA Myotis lucifugus ENSMLUG00000007476 I 1.000
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.972
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.889
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.847
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.958
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.819
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 1.000
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 1.000
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 1.000
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.849
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.819
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.000
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.944
CSDA Pan troglodytes ENSPTRG00000004681 I 1.000
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 1.000
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 1.000
ENSPPYG00000001466 Pongo pygmaeus ENSPPYG00000001466 I 0.831
YBX2 Procavia capensis ENSPCAG00000008019 I 0.958
CSDA Procavia capensis ENSPCAG00000001397 I 0.930
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 1.000
CSDA Pteropus vampyrus ENSPVAG00000006740 I 1.000
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 1.000
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.986
Csda Rattus norvegicus ENSRNOG00000005480 I 1.000
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.972
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.958
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.861
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.944
YBX2 Sorex araneus ENSSARG00000000488 I 0.944
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 1.000
YBX2 Sus scrofa ENSSSCG00000017938 I 0.958
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.861
ENSSSCG00000012830 Sus scrofa ENSSSCG00000012830 I 0.806
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.944
CSDA Sus scrofa ENSSSCG00000000633 I 1.000
CSDA Taeniopygia guttata ENSTGUG00000012047 I 1.000
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 1.000
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 1.000
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 1.000
CSDA Tupaia belangeri ENSTBEG00000012570 I 1.000
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.958
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.873
YBX1 Vicugna pacos ENSVPAG00000000068 I 1.000
Q00436 Xenopus laevis Q00436 I 1.000
AAI55915 Xenopus laevis AAI55915 I 0.958
AAI69704 Xenopus laevis AAI69704 I 0.958
ybx2-a Xenopus laevis AAI69706 D 0.958
CAA42778 Xenopus laevis CAA42778 I 1.000
P21573 Xenopus laevis P21573 I 1.000
P21574 Xenopus laevis P21574 I 0.958
P45441 Xenopus laevis P45441 I 0.944
AAI55914 Xenopus laevis AAI55914 I 0.944
AAI30161 Xenopus laevis AAI30161 I 1.000
AAI06324 Xenopus laevis AAI06324 I 1.000
AAH42217 Xenopus laevis AAH42217 I 1.000
AAH41191 Xenopus laevis AAH41191 I 1.000
AAA49924 Xenopus laevis AAA49924 I 0.944
AAA49716 Xenopus laevis AAA49716 I 0.958
AAA49715 Xenopus laevis AAA49715 I 1.000
ybx1 Xenopus tropicalis ENSXETG00000013436 I 1.000
csda Xenopus tropicalis ENSXETG00000016239 I 0.958