CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CELF1
(
Dasypus novemcinctus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDNOG00000009523
T36319_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDNOP00000007387
RRM
18
86
MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSCCFVTFYTRKAALEAQNALHNMKVLPGM
ENSDNOP00000007387
RRM
108
148
LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRXX
ENSDNOP00000007387
RRM
401
471
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Dasypus novemcinctus
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R000345
Ailuropoda melanoleuca
Ame_R000345
I
0.000
ANKRD17
Anolis carolinensis
ENSACAG00000011145
I
0.000
ENSACAG00000013168
Anolis carolinensis
ENSACAG00000013168
I
0.000
ANKRD17
Bos taurus
ENSBTAG00000004912
I
0.000
ENSBTAG00000010871
Bos taurus
ENSBTAG00000010871
I
0.000
ANKRD17
Callithrix jacchus
ENSCJAG00000014029
I
0.000
ANKHD1
Callithrix jacchus
ENSCJAG00000016624
I
0.000
ANKRD17
Canis familiaris
ENSCAFG00000002998
I
0.000
ENSCAFG00000005786
Canis familiaris
ENSCAFG00000005786
I
0.000
ENSCPOG00000019435
Cavia porcellus
ENSCPOG00000019435
I
0.000
ANKRD17
Cavia porcellus
ENSCPOG00000013416
I
0.000
ANKRD17
Choloepus hoffmanni
ENSCHOG00000013527
I
0.000
ENSCHOG00000005963
Choloepus hoffmanni
ENSCHOG00000005963
I
0.000
ankhd1
Danio rerio
ENSDARG00000077860
I
0.000
ENSDNOG00000014116
Dasypus novemcinctus
ENSDNOG00000014116
I
0.000
Ankrd17
Dipodomys ordii
ENSDORG00000011159
I
0.000
ENSETEG00000012639
Echinops telfairi
ENSETEG00000012639
I
0.000
LOC100072419
Equus caballus
ENSECAG00000015036
I
0.000
ENSFCAG00000001275
Felis catus
ENSFCAG00000001275
I
0.000
ANKHD1-EIF4EBP3
Gallus gallus
ENSGALG00000001099
I
0.000
ANKHD1
Gasterosteus aculeatus
ENSGACG00000018351
I
0.000
ANKRD17
Gorilla gorilla
ENSGGOG00000006916
I
0.000
ENSGGOG00000000288
Gorilla gorilla
ENSGGOG00000000288
I
0.000
ENSG00000249536
Homo sapiens
ENSG00000249536
I
0.000
ANKRD17
Homo sapiens
ENSG00000132466
I
0.000
ANKHD1
Homo sapiens
ENSG00000131503
D
0.000
ENSLAFG00000005337
Loxodonta africana
ENSLAFG00000005337
I
0.000
ANKRD17
Loxodonta africana
ENSLAFG00000021478
I
0.000
XR_012966.1
Macaca mulatta
ENSMMUG00000030283
I
0.000
ENSMMUG00000019583
Macaca mulatta
ENSMMUG00000019583
I
0.000
ENSMEUG00000013599
Macropus eugenii
ENSMEUG00000013599
I
0.000
ANKRD17
Macropus eugenii
ENSMEUG00000015289
I
0.000
ANKRD17
Meleagris gallopavo
ENSMGAG00000010121
I
0.000
SLC4A9
Meleagris gallopavo
ENSMGAG00000001068
I
0.000
ENSMICG00000000358
Microcebus murinus
ENSMICG00000000358
I
0.000
ANKRD17
Monodelphis domestica
ENSMODG00000019154
I
0.000
ENSMODG00000011596
Monodelphis domestica
ENSMODG00000011596
I
0.000
Ankhd1
Mus musculus
ENSMUSG00000024483
I
0.000
Ankrd17
Mus musculus
ENSMUSG00000055204
I
0.000
ENSMUSG00000089986
Mus musculus
ENSMUSG00000089986
I
0.000
ENSMLUG00000003126
Myotis lucifugus
ENSMLUG00000003126
I
0.000
ENSOPRG00000006675
Ochotona princeps
ENSOPRG00000006675
I
0.000
ANKRD17
Ochotona princeps
ENSOPRG00000014184
I
0.000
ENSOCUG00000011629
Oryctolagus cuniculus
ENSOCUG00000011629
I
0.000
ENSOCUG00000015943
Oryctolagus cuniculus
ENSOCUG00000015943
I
0.000
ANKHD1
Oryzias latipes
ENSORLG00000006908
I
0.000
ENSOGAG00000014263
Otolemur garnettii
ENSOGAG00000014263
I
0.000
ANKRD17
Pan troglodytes
ENSPTRG00000016149
I
0.000
XR_019937.1
Pan troglodytes
ENSPTRG00000017313
I
0.000
ENSPPYG00000014821
Pongo pygmaeus
ENSPPYG00000014821
I
0.000
ENSPPYG00000015854
Pongo pygmaeus
ENSPPYG00000015854
I
0.000
ENSPCAG00000016105
Procavia capensis
ENSPCAG00000016105
I
0.000
ANKRD17
Pteropus vampyrus
ENSPVAG00000001827
I
0.000
ENSPVAG00000009697
Pteropus vampyrus
ENSPVAG00000009697
I
0.000
Ankrd17
Rattus norvegicus
ENSRNOG00000002940
I
0.000
Ankhd1-Eif4ebp3
Rattus norvegicus
ENSRNOG00000030247
I
0.000
ENSSARG00000007287
Sorex araneus
ENSSARG00000007287
I
0.000
ENSSTOG00000001936
Spermophilus tridecemlineatus
ENSSTOG00000001936
I
0.000
ANKRD17
Spermophilus tridecemlineatus
ENSSTOG00000009037
I
0.000
ENSSSCG00000014364
Sus scrofa
ENSSSCG00000014364
I
0.000
ANKRD17
Taeniopygia guttata
ENSTGUG00000001580
I
0.000
ANKHD1
Taeniopygia guttata
ENSTGUG00000001656
I
0.000
ANKHD1
Takifugu rubripes
ENSTRUG00000001146
I
0.000
ANKRD17
Tarsius syrichta
ENSTSYG00000004652
I
0.000
ENSTSYG00000003323
Tarsius syrichta
ENSTSYG00000003323
I
0.000
ANKHD1
Tetraodon nigroviridis
ENSTNIG00000008996
I
0.000
ENSTTRG00000005573
Tursiops truncatus
ENSTTRG00000005573
I
0.000
ANKRD17
Tursiops truncatus
ENSTTRG00000016542
I
0.000
ANKRD17
Vicugna pacos
ENSVPAG00000001331
I
0.000
ENSVPAG00000002452
Vicugna pacos
ENSVPAG00000002452
I
0.000
ankrd17
Xenopus tropicalis
ENSXETG00000008132
I
0.000
ankhd1
Xenopus tropicalis
ENSXETG00000018337
I
0.000