HNRNPC (Macropus eugenii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMEUG00000010928 T38239_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.984
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.891
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000009974 RRM 18 81

Links

Other RRM family RBPs
Other Macropus eugenii RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002887117.1 Arabidopsis lyrata fgenesh2_kg.2__1062__AT1G67950.2 N 0.000
XM_002867996.1 Arabidopsis lyrata fgenesh2_kg.7__2538__AT4G17720.1 N 0.000
XM_002865109.1 Arabidopsis lyrata Al_scaffold_0008_128 N 0.000
AT5G46870 Arabidopsis thaliana AT5G46870-TAIR-G N 0.000
AT4G17720 Arabidopsis thaliana AT4G17720-TAIR-G N 0.000
AT1G67950 Arabidopsis thaliana AT1G67950-TAIR-G N 0.000
BRADI1G51740 Brachypodium distachyon BRADI1G51740 N 0.000
BRADI5G20150 Brachypodium distachyon BRADI5G20150 N 0.000
BRADI1G10760 Brachypodium distachyon BRADI1G10760 N 0.000
PK12998.1 Cannabis sativa PK12998.1 N 0.000
PK05006.1 Cannabis sativa PK05006.1 N 0.000
Glyma09g33960.1 Glycine max Glyma09g33960.1 N 0.000
Glyma01g01950.1 Glycine max Glyma01g01950.1 N 0.000
MDP0000320634 Malus x domestica MDP0000320634 N 0.000
MDP0000177505 Malus x domestica MDP0000177505 N 0.000
MDP0000596287 Malus x domestica MDP0000596287 N 0.000
cassava25244.valid.m1 Manihot esculenta cassava25244.valid.m1 N 0.000
cassava25245.valid.m1 Manihot esculenta cassava25245.valid.m1 N 0.000
Medtr5g029540 Medicago truncatula Medtr5g029540 N 0.000
Medtr8g077770 Medicago truncatula Medtr8g077770 N 0.000
mgf007506m Mimulus guttatus mgf007506m N 0.000
mgf014593m Mimulus guttatus mgf014593m N 0.000
BGIOSIBCE020376 Oryza indica BGIOSIBCE020376 N 0.000
BGIOSIBCE016423 Oryza indica BGIOSIBCE016423 N 0.000
BGIOSIBCE012743 Oryza indica BGIOSIBCE012743 N 0.000
LOC_Os03g50560 Oryza sativa LOC_Os03g50560 N 0.000
LOC_Os06g02240 Oryza sativa LOC_Os06g02240 N 0.000
LOC_Os04g50790 Oryza sativa LOC_Os04g50790 N 0.000
PDK_20s1373891g001 Phoenix dactylifera PDK_20s1373891g001 N 0.000
PDK_20s1346002g005 Phoenix dactylifera PDK_20s1346002g005 N 0.000
PDK_20s1613681g001 Phoenix dactylifera PDK_20s1613681g001 N 0.000
B9GZI4_POPTR Populus trichocarpa POPTR_0003s09410 N 0.000
A9PE83_POPTR Populus trichocarpa POPTR_0001s02090 N 0.000
ppa021083m Prunus persica ppa021083m N 0.000
30073.m002271 Ricinus communis 30073.m002271 N 0.000
29682.m000595 Ricinus communis 29682.m000595 N 0.000
SB01G010170 Sorghum bicolor Sb01g010170 N 0.000
SB10G000940 Sorghum bicolor Sb10g000940 N 0.000
SB06G027200 Sorghum bicolor Sb06g027200 N 0.000
GSVIVG00024381001 Vitis vinifera GSVIVG00024381001 N 0.000
GSVIVG00013098001 Vitis vinifera GSVIVG00013098001 N 0.000
GRMZM2G127559 Zea mays GRMZM2G127559 N 0.000
GRMZM2G051890 Zea mays GRMZM2G051890 N 0.000
GRMZM2G035719 Zea mays GRMZM2G035719 N 0.000
GRMZM2G102808 Zea mays GRMZM2G102808 N 0.000