SYNCRIP (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000001721 T39809_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.805
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.745
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000001535 RRM 114 176
ENSOGAP00000001535 RRM 220 262
ENSOGAP00000001535 RRM 290 352

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.725
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 0.825
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.805
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.725
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.725
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 0.825
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 0.825
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.725
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.711
SYNCRIP Canis familiaris ENSCAFG00000003024 I 0.825
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.725
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 0.825
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.714
syncrip Danio rerio ENSDARG00000040184 I 0.760
syncripl Danio rerio ENSDARG00000026723 I 0.752
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.959
Syncrip Dipodomys ordii ENSDORG00000005217 I 1.000
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.820
HNRNPR Equus caballus ENSECAG00000013733 I 0.725
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.825
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.720
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.765
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.762
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 0.825
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.725
HNRNPR Homo sapiens ENSG00000125944 I 0.725
SYNCRIP Homo sapiens ENSG00000135316 I 0.825
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.725
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 0.825
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.725
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 0.825
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.854
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.720
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.825
SYNCRIP Microcebus murinus ENSMICG00000007192 I 0.825
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 0.825
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.720
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 0.825
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.725
Syncrip Mus musculus ENSMUSG00000032423 I 0.820
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.815
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.720
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.820
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 0.825
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.711
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.741
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.750
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 0.825
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.714
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 0.825
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.725
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.860
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 0.825
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.714
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.820
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.725
HNRNPR Sorex araneus ENSSARG00000001732 I 0.714
SYNCRIP Sorex araneus ENSSARG00000005967 I 0.825
SYNCRIP Sus scrofa ENSSSCG00000004294 I 0.825
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.720
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.743
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.748
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 0.825
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.748
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.743
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.714
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 0.825
AAH70529 Xenopus laevis AAH70529 I 0.800
AAI61702 Xenopus laevis AAI61702 I 0.745
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.745
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.805