CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
RALYL
(
Tupaia belangeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTBEG00000005551
T41724_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.797
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.766
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.734
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTBEP00000004778
RRM
23
86
VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLX
Links
Other
RRM
family RBPs
Other
Tupaia belangeri
RBPs
129 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.000
GF14192
Drosophila ananassae
FBgn0091219
I
0.000
GH11642
Drosophila grimshawi
FBgn0119122
I
0.000
GH11645
Drosophila grimshawi
FBgn0119125
I
0.000
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.000
aret
Drosophila melanogaster
FBgn0000114
D
0.000
GI17944
Drosophila mojavensis
FBgn0140684
I
0.000
GL18624
Drosophila persimilis
FBgn0156225
I
0.000
GA25725-RB
Drosophila pseudoobscura
FBgn0247102
I
0.000
GM26763
Drosophila sechellia
FBgn0181616
I
0.000
GD23828
Drosophila simulans
FBgn0195198
I
0.000
GJ17715
Drosophila virilis
FBgn0204884
I
0.000
GJ17718
Drosophila virilis
FBgn0204887
I
0.000
GK15493
Drosophila willistoni
FBgn0217498
I
0.000
GK15495
Drosophila willistoni
FBgn0217500
I
0.000
GE18580
Drosophila yakuba
FBgn0235987
I
0.000