hnrnpc (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000016162 T42905_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.922
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.859
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000035243 RRM 19 82

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.766
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.781
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.922
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.922
RALY Anolis carolinensis ENSACAG00000008983 I 0.797
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.781
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.922
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.766
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.734
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.922
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.859
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.750
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.766
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.922
RALY Canis familiaris ENSCAFG00000007490 I 0.766
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.781
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.906
RALY Cavia porcellus ENSCPOG00000000309 I 0.781
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.906
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.766
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.797
zgc:55733 Danio rerio ENSDARG00000022579 I 0.859
raly Danio rerio ENSDARG00000059972 I 0.766
zgc:55701 Danio rerio ENSDARG00000053810 I 0.844
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.750
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.781
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.922
Raly Dipodomys ordii ENSDORG00000013400 I 0.766
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.797
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.750
RALYL Echinops telfairi ENSETEG00000014028 I 0.797
LOC100054239 Equus caballus ENSECAG00000012357 I 0.766
LOC100059269 Equus caballus ENSECAG00000017645 I 0.922
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.906
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.797
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.734
LOC770541 Gallus gallus ENSGALG00000015797 I 0.781
RALY Gallus gallus ENSGALG00000002054 I 0.797
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.844
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.875
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.797
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.719
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.859
RALY Gorilla gorilla ENSGGOG00000022709 I 0.766
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.922
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.828
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.859
RALY Homo sapiens ENSG00000125970 D 0.766
HNRNPC Homo sapiens ENSG00000092199 D 0.922
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.922
RALY Loxodonta africana ENSLAFG00000000321 I 0.766
RALYL Macaca mulatta ENSMMUG00000031878 I 0.797
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.906
RALY Macaca mulatta ENSMMUG00000018093 I 0.766
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.922
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.859
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.922
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.922
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.797
RALYL Microcebus murinus ENSMICG00000005558 I 0.797
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.750
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.922
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.844
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.922
Ralyl Mus musculus ENSMUSG00000039717 I 0.797
Raly Mus musculus ENSMUSG00000027593 I 0.766
RALY Myotis lucifugus ENSMLUG00000005330 I 0.766
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.922
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.797
RALY Ochotona princeps ENSOPRG00000008423 I 0.766
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.906
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.922
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.906
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.922
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.922
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.922
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.734
RALYL Oryzias latipes ENSORLG00000017934 I 0.797
RALYL Oryzias latipes ENSORLG00000012719 I 0.797
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.828
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.891
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.922
RALYL Pan troglodytes ENSPTRG00000020381 I 0.797
RALY Pan troglodytes ENSPTRG00000013410 I 0.766
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.922
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.859
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.875
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.766
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.922
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.797
RALY Procavia capensis ENSPCAG00000016867 I 0.750
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.859
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.922
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.797
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.734
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.922
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.781
Raly Rattus norvegicus ENSRNOG00000017405 I 0.766
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.734
HNRNPC Sorex araneus ENSSARG00000003711 I 0.922
RALYL Sorex araneus ENSSARG00000002374 I 0.797
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.766
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.766
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.906
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.766
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.766
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.797
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.781
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.875
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.797
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.797
RALY Tarsius syrichta ENSTSYG00000002598 I 0.719
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.922
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.891
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.781
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.781
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.922
RALY Tupaia belangeri ENSTBEG00000009812 I 0.750
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.797
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.922
RALY Tursiops truncatus ENSTTRG00000006590 I 0.766
RALYL Vicugna pacos ENSVPAG00000008501 I 0.797
RALY Vicugna pacos ENSVPAG00000000373 I 0.766
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.922
AAA60937 Xenopus laevis AAA60937 I 0.922
AAH41534 Xenopus laevis AAH41534 I 0.938
AAH71084 Xenopus laevis AAH71084 I 0.922
P19600 Xenopus laevis P19600 I 0.922
raly Xenopus tropicalis ENSXETG00000019514 I 0.781
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.766