tag-262 (Caenorhabditis elegans)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Y54H5A.3 T46314_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.732
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Y54H5A.3 RRM 205 275

Links

Other RRM family RBPs
Other Caenorhabditis elegans RBPs

57 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010642 Aedes aegypti AAEL010642 I 0.704
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.732
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.746
AGAP010200 Anopheles gambiae AGAP010200 I 0.718
GP3.076550 Batrachochytrium dendrobatidis GP3.076550 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.732
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.761
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.761
Bm1_40380 Brugia malayi Bm1_40380 I 0.873
CBN12017 Caenorhabditis brenneri CBN12017 I 1.000
CBG21313 Caenorhabditis briggsae CBG21313 I 1.000
CJA09414 Caenorhabditis japonica CJA09414 I 0.986
CRE29329 Caenorhabditis remanei CRE29329 I 1.000
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.732
RBM42 Canis familiaris ENSCAFG00000006925 I 0.732
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.761
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.732
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.704
rbm42 Danio rerio ENSDARG00000039910 I 0.746
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.704
LOC100051102 Equus caballus ENSECAG00000018215 I 0.732
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.732
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.761
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.732
RBM42 Homo sapiens ENSG00000126254 D 0.732
LOAG_04208 Loa loa LOAG_04208 I 0.873
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.775
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.732
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.732
Minc13155 Meloidogyne incognita Minc13155 I 0.845
RBM42 Microcebus murinus ENSMICG00000009880 I 0.732
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.732
Rbm42 Mus musculus ENSMUSG00000036733 I 0.732
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.732
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.732
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.732
RBM42 Oryzias latipes ENSORLG00000003387 I 0.761
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.732
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.732
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.732
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.887
RBM42 Procavia capensis ENSPCAG00000013053 I 0.732
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.732
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.732
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.718
RBM42 Sorex araneus ENSSARG00000010724 I 0.732
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.732
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.761
RBM42 Sus scrofa ENSSSCG00000002905 I 0.732
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.761
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.732
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.761
gw1.1.892.1 Trichoplax adhaerens gw1.1.892.1 N 0.704
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.873
A2VDB3 Xenopus laevis A2VDB3 I 0.718
AAI29698 Xenopus laevis AAI29698 I 0.718
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.732