CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Aqu1.229782
(
Amphimedon queenslandica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Aqu1.229782
T49061_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.755
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.712
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.712
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.712
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.712
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.712
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.712
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.712
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.712
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aqu1.229782
RRM
9
80
IYINNLNEKVKKEELKKSLYAIFSQFGDILDIVALKTLKMRGQAFVVFRDIGSATNALRSMQGFPFYDKPMR
Aqu1.229782
RRM
145
211
LFISNLPPETTEVMLKMLFEQFPGLQEIRLVPSRTDIAFVEYENESQATEAMSSLQDFKIVPTHPMK
Links
Other
RRM
family RBPs
Other
Amphimedon queenslandica
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.741
AAEL014167
Aedes aegypti
AAEL014167
I
0.748
AAEL002980
Aedes aegypti
AAEL002980
I
0.748
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.712
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.705
AGAP011637
Anopheles gambiae
AGAP011637
I
0.727
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.770
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.763
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.705
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.712
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.777
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.777
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.705
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.705
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.712
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.705
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.770
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.705
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.712
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.755
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.719
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.741
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.741
snrpa
Danio rerio
ENSDARG00000018890
I
0.712
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.777
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.712
GF21334
Drosophila ananassae
FBgn0098336
I
0.770
GG18748
Drosophila erecta
FBgn0110957
I
0.755
GH24608
Drosophila grimshawi
FBgn0132064
I
0.763
snf
Drosophila melanogaster
FBgn0003449
D
0.755
snf
Drosophila mojavensis
FBgn0069598
I
0.763
GL14287
Drosophila persimilis
FBgn0151892
I
0.770
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.770
GM12396
Drosophila sechellia
FBgn0167333
I
0.755
GJ16850
Drosophila virilis
FBgn0204029
I
0.763
GK25839
Drosophila willistoni
FBgn0227798
I
0.763
GE16390
Drosophila yakuba
FBgn0233919
I
0.755
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.705
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.712
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.705
SNRPA
Felis catus
ENSFCAG00000016209
I
0.712
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.712
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.705
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.712
SNRPA
Homo sapiens
ENSG00000077312
D
0.712
SNRPB2
Homo sapiens
ENSG00000125870
I
0.705
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.763
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.705
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.705
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.712
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.712
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.705
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.719
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.705
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.705
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.712
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.705
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.777
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.784
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.712
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.705
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.705
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.727
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.712
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.705
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.712
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.705
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.712
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.705
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.712
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.712
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.705
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.712
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.705
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.705
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.712
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.705
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.712
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.705
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.763
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.712
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.705
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.705
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.705
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.705
AAH44979
Xenopus laevis
AAH44979
I
0.719
CAA41021
Xenopus laevis
CAA41021
I
0.719
P45429
Xenopus laevis
P45429
I
0.719