Aqu1.229782 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.229782 T49061_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.755
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.712
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.712
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.712
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.712
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.712
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.712
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.712
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.229782 RRM 9 80
Aqu1.229782 RRM 145 211

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.741
AAEL014167 Aedes aegypti AAEL014167 I 0.748
AAEL002980 Aedes aegypti AAEL002980 I 0.748
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.712
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.705
AGAP011637 Anopheles gambiae AGAP011637 I 0.727
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.770
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.763
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.705
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.712
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.777
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.777
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.705
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.705
SNRPA Canis familiaris ENSCAFG00000005091 I 0.712
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.705
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.770
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.705
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.712
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.755
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.719
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.741
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.741
snrpa Danio rerio ENSDARG00000018890 I 0.712
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.777
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.712
GF21334 Drosophila ananassae FBgn0098336 I 0.770
GG18748 Drosophila erecta FBgn0110957 I 0.755
GH24608 Drosophila grimshawi FBgn0132064 I 0.763
snf Drosophila melanogaster FBgn0003449 D 0.755
snf Drosophila mojavensis FBgn0069598 I 0.763
GL14287 Drosophila persimilis FBgn0151892 I 0.770
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.770
GM12396 Drosophila sechellia FBgn0167333 I 0.755
GJ16850 Drosophila virilis FBgn0204029 I 0.763
GK25839 Drosophila willistoni FBgn0227798 I 0.763
GE16390 Drosophila yakuba FBgn0233919 I 0.755
LOC100050830 Equus caballus ENSECAG00000018407 I 0.705
LOC100068274 Equus caballus ENSECAG00000013141 I 0.712
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.705
SNRPA Felis catus ENSFCAG00000016209 I 0.712
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.712
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.705
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.712
SNRPA Homo sapiens ENSG00000077312 D 0.712
SNRPB2 Homo sapiens ENSG00000125870 I 0.705
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.763
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.705
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.705
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.712
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.712
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.705
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.719
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.705
Snrpa Mus musculus ENSMUSG00000061479 I 0.705
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.712
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.705
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.777
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.784
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.712
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.705
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.705
SNRPA Oryzias latipes ENSORLG00000006536 I 0.727
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.712
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.705
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.712
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.705
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.712
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.705
SNRPA Procavia capensis ENSPCAG00000012325 I 0.712
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.712
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.705
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.712
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.705
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.705
SNRPA Sus scrofa ENSSSCG00000002998 I 0.712
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.705
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.712
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.705
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.763
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.712
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.705
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.705
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.705
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.705
AAH44979 Xenopus laevis AAH44979 I 0.719
CAA41021 Xenopus laevis CAA41021 I 0.719
P45429 Xenopus laevis P45429 I 0.719