CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Glyma13g27570.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma13g27570.1
T52830_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6
RNAcompete CONSTRUCTS
UGUUUUD
RNAcompete
Ray et al.(2013)
RNCMPT00229
0.729
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma13g27570.1
RRM
68
135
LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNG
Glyma13g27570.1
RRM
162
233
IFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMR
Glyma13g27570.1
RRM
271
335
IFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
64 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002893265.1
Arabidopsis lyrata
fgenesh2_kg.1__2600__AT1G23860.3
N
0.000
XM_002869274.1
Arabidopsis lyrata
fgenesh2_kg.7__1015__AT4G31580.1
N
0.000
XM_002878724.1
Arabidopsis lyrata
fgenesh2_kg.4__375__AT2G24590.1
N
0.000
SRZ-21
Arabidopsis thaliana
AT1G23860-TAIR-G
N
0.000
RSZ22a
Arabidopsis thaliana
AT2G24590-TAIR-G
N
0.000
SRZ-22
Arabidopsis thaliana
AT4G31580-TAIR-G
N
0.000
BRADI1G46980
Brachypodium distachyon
BRADI1G46980
N
0.000
PK15383.1
Cannabis sativa
PK15383.1
N
0.000
PK23390.1
Cannabis sativa
PK23390.1
N
0.000
Cucsa.285940
Cucumis sativus
Cucsa.285940
N
0.000
Cucsa.311100
Cucumis sativus
Cucsa.311100
N
0.000
Glyma08g39830.1
Glycine max
Glyma08g39830.1
N
0.000
Glyma18g18860.1
Glycine max
Glyma18g18860.1
N
0.000
Glyma17g29080.1
Glycine max
Glyma17g29080.1
N
0.000
Glyma14g17930.1
Glycine max
Glyma14g17930.1
N
0.000
LjSGA_021019.1
Lotus japonicus
LjSGA_021019.1
N
0.000
MDP0000256723
Malus x domestica
MDP0000256723
N
0.000
MDP0000870155
Malus x domestica
MDP0000870155
N
0.000
cassava8058.valid.m1
Manihot esculenta
cassava8058.valid.m1
N
0.000
cassava38162.valid.m1
Manihot esculenta
cassava38162.valid.m1
N
0.000
cassava37340.valid.m1
Manihot esculenta
cassava37340.valid.m1
N
0.000
cassava18359.valid.m1
Manihot esculenta
cassava18359.valid.m1
N
0.000
Medtr1g010600
Medicago truncatula
Medtr1g010600
N
0.000
Medtr3g133170
Medicago truncatula
Medtr3g133170
N
0.000
mgf005494m
Mimulus guttatus
mgf005494m
N
0.000
mgf014721m
Mimulus guttatus
mgf014721m
N
0.000
BGIOSIBCE020929
Oryza indica
BGIOSIBCE020929
N
0.000
LOC_Os06g08840
Oryza sativa
LOC_Os06g08840
N
0.000
LOC_Os02g54770
Oryza sativa
LOC_Os02g54770
N
0.000
LOC_Os02g39720
Oryza sativa
LOC_Os02g39720
N
0.000
PDK_20s1302151g001
Phoenix dactylifera
PDK_20s1302151g001
N
0.000
e_gw1.332.33.1
Physcomitrella patens
e_gw1.332.33.1
N
0.000
e_gw1.207.127.1
Physcomitrella patens
e_gw1.207.127.1
N
0.000
B9ILD8_POPTR
Populus trichocarpa
POPTR_0018s03390
N
0.000
B9N668_POPTR
Populus trichocarpa
POPTR_0006s28720
N
0.000
ppa012147m
Prunus persica
ppa012147m
N
0.000
29848.m004475
Ricinus communis
29848.m004475
N
0.000
28610.m000073
Ricinus communis
28610.m000073
N
0.000
gw1.3.1555.1
Selaginella moellendorfii
gw1.3.1555.1
N
0.000
SB04G035540
Sorghum bicolor
Sb04g035540
N
0.000
SB10G005960
Sorghum bicolor
Sb10g005960
N
0.000
Sb04g025670
Sorghum bicolor
Sb04g025670
N
0.000
GSVIVG00033172001
Vitis vinifera
GSVIVG00033172001
N
0.000
GSVIVG00020220001
Vitis vinifera
GSVIVG00020220001
N
0.000
GRMZM2G080930
Zea mays
GRMZM2G080930
N
0.000
GRMZM2G151923
Zea mays
GRMZM2G151923
N
0.000
GRMZM2G070239
Zea mays
GRMZM2G070239
N
0.000
GRMZM2G027105
Zea mays
GRMZM2G027105
N
0.000