Glyma13g27570.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma13g27570.1 T52830_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma13g27570.1 RRM 68 135
Glyma13g27570.1 RRM 162 233
Glyma13g27570.1 RRM 271 335

Links

Other RRM family RBPs
Other Glycine max RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.985
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.951
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.951
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.951
chr4.CM1334.150.nc Lotus japonicus chr4.CM1334.150.nc N 0.902
Medtr8g146650 Medicago truncatula Medtr8g146650 N 0.888
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.864
MDP0000294628 Malus x domestica MDP0000294628 I 0.864
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.859
PK10695.1 Cannabis sativa PK10695.1 I 0.859
ppa006617m Prunus persica ppa006617m N 0.840
29842.m003612 Ricinus communis 29842.m003612 N 0.826
B9H1C9_POPTR Populus trichocarpa POPTR_0004s01690 N 0.807
mgf010468m Mimulus guttatus mgf010468m I 0.803
ATRBP45B Arabidopsis thaliana AT1G11650-TAIR-G N 0.797
XM_002889837.1 Arabidopsis lyrata fgenesh2_kg.1__1255__AT1G11650.2 N 0.792
mgf014417m Mimulus guttatus mgf014417m N 0.788
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.784
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.784
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.784
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.784
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.784
cassava44220.valid.m1 Manihot esculenta cassava44220.valid.m1 N 0.778
cassava44219.valid.m1 Manihot esculenta cassava44219.valid.m1 N 0.778
BRADI3G15180 Brachypodium distachyon BRADI3G15180 N 0.763
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.760
MDP0000614064 Malus x domestica MDP0000614064 N 0.755
GRMZM2G426591 Zea mays GRMZM2G426591 N 0.755
BGIOSIBSE038779 Oryza indica BGIOSIBSE038779 N 0.754
ppa006577m Prunus persica ppa006577m I 0.750
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.750
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.749
MDP0000223369 Malus x domestica MDP0000223369 N 0.745
29666.m001436 Ricinus communis 29666.m001436 I 0.745
BGIOSIBCE016680 Oryza indica BGIOSIBCE016680 N 0.736
LOC_Os04g53440 Oryza sativa LOC_Os04g53440 N 0.736
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.729
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.729
GRMZM2G012628 Zea mays GRMZM2G012628 N 0.726
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.726
ATRBP45C Arabidopsis thaliana AT4G27000-TAIR-G N 0.725
SB06G029180 Sorghum bicolor Sb06g029180 N 0.721
SB01G045570 Sorghum bicolor Sb01g045570 I 0.721
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.720
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.716
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.712
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.710
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.710
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.710
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.710
ppa005903m Prunus persica ppa005903m I 0.710
29801.m003218 Ricinus communis 29801.m003218 I 0.709
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.707
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.705
30170.m014217 Ricinus communis 30170.m014217 I 0.705
SB01G016170 Sorghum bicolor Sb01g016170 N 0.704
30169.m006434 Ricinus communis 30169.m006434 I 0.702
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.702
XM_002864318.1 Arabidopsis lyrata fgenesh2_kg.8__1388__AT5G54900.1 N 0.702
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.702
MDP0000136330 Malus x domestica MDP0000136330 I 0.700
MDP0000200455 Malus x domestica MDP0000200455 I 0.700
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.700
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.700