CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TGVEG_097260
(
Toxoplasma gondii
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
TGVEG_097260
T60916_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.711
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TGVEG_097260
S1
33
107
PDVEDLVMVKVNRIADLGAYVSLLEYNNMEGMILMSELSKRRFRSVNKLIRVGRHEVVMVLRVDPKKGYIDLSKR
Links
Other
S1
family RBPs
Other
Toxoplasma gondii
RBPs
174 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.C_scaffold_15000016
Phytophthora capsici
fgenesh1_pm.C_scaffold_15000016
N
0.000
C_scaffold_35000023
Phytophthora ramorum
C_scaffold_35000023
N
0.000
s_469761
Phytophthora sojae
s_469761
N
0.000