AAI28969 (Xenopus laevis)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 AAI28969 T61759_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AAI28969 S1 78 161

Links

Other S1 family RBPs
Other Xenopus laevis RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL003401 Aedes aegypti AAEL003401 N 0.738
Ame_R013924 Ailuropoda melanoleuca Ame_R013924 N 0.976
Aqu1.223919 Amphimedon queenslandica Aqu1.223919 N 0.714
POLR2G Anolis carolinensis ENSACAG00000001005 N 0.988
amel4_ncbi_hmm13760 Apis mellifera amel4_ncbi_hmm13760 N 0.762
RPB7_BOVIN Bos taurus ENSBTAG00000009483 N 0.976
estExt_fgenesh2_pg.C_1620033 Branchiostoma floridae estExt_fgenesh2_pg.C_1620033 N 0.917
estExt_gwp.C_3050025 Branchiostoma floridae estExt_gwp.C_3050025 N 0.917
Bm1_48540 Brugia malayi Bm1_48540 N 0.738
CBN18093 Caenorhabditis brenneri CBN18093 N 0.750
CBG04195 Caenorhabditis briggsae CBG04195 N 0.762
rpb-7 Caenorhabditis elegans Y54E10BR.6 N 0.762
CJA18930 Caenorhabditis japonica CJA18930 N 0.762
CRE30052 Caenorhabditis remanei CRE30052 N 0.750
LOC100398629 Callithrix jacchus ENSCJAG00000018688 N 0.976
POLR2G Canis familiaris ENSCAFG00000015461 N 0.976
estExt_Genewise1Plus.C_2200037 Capitella teleta estExt_Genewise1Plus.C_2200037 N 0.869
POLR2G Cavia porcellus ENSCPOG00000001153 N 0.976
ENSCING00000004991 Ciona intestinalis ENSCING00000004991 N 0.917
ENSCSAVG00000002667 Ciona savignyi ENSCSAVG00000002667 N 0.857
CpipJ_CPIJ001219 Culex pipiens CpipJ_CPIJ001219 N 0.750
CPIJ001219 Culex quinquefasciatus CPIJ001219 N 0.750
polr2gl Danio rerio ENSDARG00000056127 N 1.000
PASA_GEN_8000031 Daphnia pulex PASA_GEN_8000031 N 0.869
Polr2g Dipodomys ordii ENSDORG00000015696 N 0.976
GF11824 Drosophila ananassae FBgn0088864 N 0.726
GG20814 Drosophila erecta FBgn0113000 N 0.726
GH18755 Drosophila grimshawi FBgn0126222 N 0.726
Rpb7 Drosophila melanogaster FBgn0051155 N 0.726
GI22645 Drosophila mojavensis FBgn0145373 N 0.726
GL12210 Drosophila persimilis FBgn0149817 N 0.726
GA27654-RA Drosophila pseudoobscura FBgn0249019 N 0.726
GA16051-RA Drosophila pseudoobscura FBgn0076067 N 0.726
GM25797 Drosophila sechellia FBgn0180653 N 0.726
GD20374 Drosophila simulans FBgn0191847 N 0.726
GJ23373 Drosophila virilis FBgn0210474 N 0.726
GK11212 Drosophila willistoni FBgn0213223 N 0.726
GE26402 Drosophila yakuba FBgn0243428 N 0.726
POLR2G Echinops telfairi ENSETEG00000019637 N 0.774
LOC100063883 Equus caballus ENSECAG00000021465 N 0.976
ENSEEUG00000007416 Erinaceus europaeus ENSEEUG00000007416 N 0.762
POLR2G Gasterosteus aculeatus ENSGACG00000017706 N 0.988
POLR2G Gorilla gorilla ENSGGOG00000011739 N 0.976
POLR2G Homo sapiens ENSG00000168002 N 0.976
XP_002157143.1 Hydra magnipapillata XP_002157143.1 N 0.881
ISCW004820 Ixodes scapularis ISCW004820 N 0.702
LOAG_03448 Loa loa LOAG_03448 N 0.786
estExt_Genewise1Plus.C_sca_120103 Lottia gigantea estExt_Genewise1Plus.C_sca_120103 N 0.869
POLR2G Loxodonta africana ENSLAFG00000004354 N 0.988
POLR2G Macaca mulatta ENSMMUG00000014368 N 0.976
POLR2G Macropus eugenii ENSMEUG00000011547 N 0.988
Minc17095 Meloidogyne incognita Minc17095 N 0.714
POLR2G Microcebus murinus ENSMICG00000009967 N 0.964
POLR2G Monodelphis domestica ENSMODG00000007984 N 0.988
Polr2g Mus musculus ENSMUSG00000071662 N 0.976
ENSMLUG00000003971 Myotis lucifugus ENSMLUG00000003971 N 0.988
ENSMLUG00000011039 Myotis lucifugus ENSMLUG00000011039 N 0.988
nasonia_NCBI_hmm304924 Nasonia vitripennis nasonia_NCBI_hmm304924 N 0.762
estExt_fgenesh1_pg.C_1060040 Nematostella vectensis estExt_fgenesh1_pg.C_1060040 N 0.857
POLR2G Ochotona princeps ENSOPRG00000014769 N 0.774
SNAPOd2T00009931001 Oikopleura dioica SNAPOd2T00009931001 N 0.810
POLR2G Ornithorhynchus anatinus ENSOANG00000005808 N 0.988
POLR2G Oryctolagus cuniculus ENSOCUG00000009485 N 0.976
POLR2G Oryzias latipes ENSORLG00000003154 N 0.988
POLR2G Pan troglodytes ENSPTRG00000003786 N 0.976
PHUM079870 Pediculus humanus PHUM079870 N 0.786
ENSPPYG00000003147 Pongo pygmaeus ENSPPYG00000003147 N 0.976
POLR2G Procavia capensis ENSPCAG00000016408 N 0.988
POLR2G Pteropus vampyrus ENSPVAG00000003481 N 0.964
Polr2g Rattus norvegicus ENSRNOG00000019439 N 0.976
POLR2G Spermophilus tridecemlineatus ENSSTOG00000004391 N 0.750
XP_001176876.1 Strongylocentrotus purpuratus XP_001176876.1 N 0.893
XP_001175728.1 Strongylocentrotus purpuratus XP_001175728.1 N 0.893
XP_001175504.1 Strongylocentrotus purpuratus XP_001175504.1 N 0.893
XP_780458.1 Strongylocentrotus purpuratus XP_780458.1 N 0.893
POLR2G Takifugu rubripes ENSTRUG00000002492 N 0.988
amel4_ncbi_hmm13760 Tribolium castaneum amel4_ncbi_hmm13760 N 0.762
POLR2G Tursiops truncatus ENSTTRG00000002478 N 0.976
POLR2G Vicugna pacos ENSVPAG00000009534 N 0.940
polr2g Xenopus tropicalis ENSXETG00000006022 N 1.000