CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_kg.C_60003
(
Myceliophthora thermophila
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
estExt_fgenesh1_kg.C_60003
T04980_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_kg.C_60003
CCCH ZF
48
72
SHVPCKFYRQGACQAGNACPFSHDL
estExt_fgenesh1_kg.C_60003
CCCH ZF
76
100
SETVCKYFAKGNCKFGPKCANIHVL
Links
Other
CCCH ZF
family RBPs
Other
Myceliophthora thermophila
RBPs
35 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.960
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.960
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.960
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.940
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.940
NCU05007
Neurospora crassa
NCU05007
N
0.940
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.940
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.940
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.940
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.940
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.920
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.920
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.900
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.900
e_gw1.10.437.1
Cryphonectria parasitica
e_gw1.10.437.1
N
0.900
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.880
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.880
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.765
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.740
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.725
ADR062W
Ashbya gossypii
ADR062W
N
0.725
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.720
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.720
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.706
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.706
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.706
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.706
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.706
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.706
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.700
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.700
orf19.7385
Candida albicans
orf19.7385
N
0.700
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.700
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.700