CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002493509.1
(
Pichia pastoris
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
XP_002493509.1
T06651_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002493509.1
CCCH ZF
120
144
SHVPCKFYRQGACQAGSSCPFSHTL
XP_002493509.1
CCCH ZF
149
171
QAATCKYFQKGTCKFGSKCALVH
Links
Other
CCCH ZF
family RBPs
Other
Pichia pastoris
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.796
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.792
DEHA0D17303g
Debaryomyces hansenii
DEHA0D17303g
N
0.792
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.771
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.760
ADR062W
Ashbya gossypii
ADR062W
N
0.760
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.750
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.750
orf19.7385
Candida albicans
orf19.7385
N
0.750
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.735
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.735
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.729
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.729
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.720
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.720
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.720
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.720
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.720
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.720
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.720
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.720
NCU05007
Neurospora crassa
NCU05007
N
0.720
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.700
KLLA0B09878g
Kluyveromyces lactis
KLLA0B09878g
N
0.700
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.700
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.700
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.700
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.700
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.700
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.700
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.700