Aqu1.220698 (Amphimedon queenslandica)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 Aqu1.220698 T17244_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.746
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.746
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.708
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.708
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.220698 CSD 20 90

Links

Other CSD family RBPs
Other Amphimedon queenslandica RBPs

139 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.775
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.775
Bm1_57515 Brugia malayi Bm1_57515 I 0.775
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.764
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.761
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.761
PHUM156710 Pediculus humanus PHUM156710 I 0.761
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.750
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.750
csda Xenopus tropicalis ENSXETG00000016239 I 0.750
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.746
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.746
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.746
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.736
YBX1 Microcebus murinus ENSMICG00000014984 I 0.736
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.736
CSDA Loxodonta africana ENSLAFG00000017247 I 0.736
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.736
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.736
CSDA Monodelphis domestica ENSMODG00000018248 I 0.736
CSDA Macaca mulatta ENSMMUG00000022469 I 0.736
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.736
CSDA Echinops telfairi ENSETEG00000002557 I 0.736
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.736
LOC100067336 Equus caballus ENSECAG00000023592 I 0.736
LOC100065107 Equus caballus ENSECAG00000013777 I 0.736
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.736
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.736
CSDA Homo sapiens ENSG00000060138 I 0.736
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.736
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.736
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.736
YB-1 Homo sapiens ENSG00000065978 D 0.736
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.736
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.736
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.736
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.736
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.736
CSDA Sus scrofa ENSSSCG00000000633 I 0.736
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.736
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.736
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.736
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.736
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.736
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.736
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.736
Csda Rattus norvegicus ENSRNOG00000005480 I 0.736
Csda Dipodomys ordii ENSDORG00000009103 I 0.736
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.736
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.736
Csda Mus musculus ENSMUSG00000030189 I 0.736
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.736
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.736
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.736
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.736
CSDA Pan troglodytes ENSPTRG00000004681 I 0.736
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.736
Ybx1 Mus musculus ENSMUSG00000028639 I 0.736
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.736
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.736
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.736
AAH42217 Xenopus laevis AAH42217 I 0.736
Q00436 Xenopus laevis Q00436 I 0.736
AAH41191 Xenopus laevis AAH41191 I 0.736
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.736
AAI06324 Xenopus laevis AAI06324 I 0.736
P21573 Xenopus laevis P21573 I 0.736
CAA42778 Xenopus laevis CAA42778 I 0.736
ybx1 Danio rerio ENSDARG00000004757 I 0.736
AAI30161 Xenopus laevis AAI30161 I 0.736
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.736
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.736
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.736
AAA49715 Xenopus laevis AAA49715 I 0.736
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.736
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.736
CSDA Cavia porcellus ENSCPOG00000011329 I 0.736
PHUM156720 Pediculus humanus PHUM156720 I 0.732
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.732
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.732
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.732
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.732
AAA49716 Xenopus laevis AAA49716 I 0.722
P21574 Xenopus laevis P21574 I 0.722
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.722
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.722
AAI69704 Xenopus laevis AAI69704 I 0.722
AAI55915 Xenopus laevis AAI55915 I 0.722
ybx2-a Xenopus laevis AAI69706 D 0.722
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.722
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.722
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.722
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.722
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.722
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.718
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.718
GD12750 Drosophila simulans FBgn0184477 I 0.718
GF10852 Drosophila ananassae FBgn0087892 I 0.718
GK16710 Drosophila willistoni FBgn0218712 I 0.718
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.718
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.718
GE20150 Drosophila yakuba FBgn0237472 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.718
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.718
GM24682 Drosophila sechellia FBgn0179545 I 0.718
GL15684 Drosophila persimilis FBgn0153288 I 0.718
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.708
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.708
AAA49924 Xenopus laevis AAA49924 I 0.708
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.708
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.708
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.708
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.708
LOC100072964 Equus caballus ENSECAG00000009996 I 0.708
YBX2 Procavia capensis ENSPCAG00000008019 I 0.708
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.708
Ybx2 Mus musculus ENSMUSG00000018554 I 0.708
P45441 Xenopus laevis P45441 I 0.708
AAI55914 Xenopus laevis AAI55914 I 0.708
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.708
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.708
YBX2 Canis familiaris ENSCAFG00000016128 I 0.708
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.708
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.708
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.708
YBX2 Sus scrofa ENSSSCG00000017938 I 0.708
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.704
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.704
GJ14010 Drosophila virilis FBgn0201228 I 0.704
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.704
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.704
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.704
AAEL001375 Aedes aegypti AAEL001375 I 0.704
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.704
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.704
GH16919 Drosophila grimshawi FBgn0124390 I 0.704
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.704
GI13673 Drosophila mojavensis FBgn0136428 I 0.704