CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKNK2
(
Callithrix jacchus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSCJAG00000000539
T18520_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.719
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000005353
KH
175
220
VGRPGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSCJAP00000005353
KH
255
314
TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPCSLSPGMPENVDRAREEI
ENSCJAP00000043084
KH
1
42
GCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSCJAP00000043084
KH
77
129
TIQVRVPYRVVGLVVGPKGATIKRIQQTHTYIVTPGRDKEPCSLSPGMPENCG
Links
Other
KH
family RBPs
Other
Callithrix jacchus
RBPs
119 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R011921
Ailuropoda melanoleuca
Ame_R011921
I
0.925
MEX3D
Bos taurus
ENSBTAG00000044028
I
0.915
MEX3D
Canis familiaris
ENSCAFG00000023712
I
0.915
MEX3D
Felis catus
ENSFCAG00000002615
I
0.906
MEX3D
Ochotona princeps
ENSOPRG00000008708
I
0.896
MEX3D
Procavia capensis
ENSPCAG00000010972
I
0.896
MEX3D
Gallus gallus
ENSGALG00000001106
I
0.887
MEX3D
Meleagris gallopavo
ENSMGAG00000002325
I
0.887
MEX3D
Myotis lucifugus
ENSMLUG00000017018
N
0.887
MEX3D
Takifugu rubripes
ENSTRUG00000007986
I
0.877
MEX3B
Oryctolagus cuniculus
ENSOCUG00000011603
I
0.868
MEX3B
Monodelphis domestica
ENSMODG00000019387
I
0.868
MEX3B
Loxodonta africana
ENSLAFG00000006027
I
0.868
D3ZFL6_RAT
Rattus norvegicus
ENSRNOG00000025142
I
0.868
Mex3b
Mus musculus
ENSMUSG00000057706
I
0.868
MEX3B
Canis familiaris
ENSCAFG00000013759
I
0.868
MEX3C
Ornithorhynchus anatinus
ENSOANG00000008116
I
0.858
MEX3B
Sorex araneus
ENSSARG00000006007
I
0.858
Q2YDI4_BOVIN
Bos taurus
ENSBTAG00000014886
I
0.858
MEX3B
Anolis carolinensis
ENSACAG00000011072
I
0.858
MEX3C
Anolis carolinensis
ENSACAG00000010265
I
0.858
MEX3C
Takifugu rubripes
ENSTRUG00000011888
I
0.858
MEX3B
Takifugu rubripes
ENSTRUG00000000367
I
0.858
MEX3B
Procavia capensis
ENSPCAG00000014150
I
0.858
MEX3C
Echinops telfairi
ENSETEG00000003647
I
0.858
MEX3C
Tupaia belangeri
ENSTBEG00000014438
I
0.849
MEX3C
Vicugna pacos
ENSVPAG00000003137
I
0.849
MEX3C
Microcebus murinus
ENSMICG00000005815
I
0.849
Mex3c
Dipodomys ordii
ENSDORG00000007962
I
0.849
MEX3C
Myotis lucifugus
ENSMLUG00000012585
I
0.849
MEX3C
Macropus eugenii
ENSMEUG00000015929
I
0.849
MEX3C
Sorex araneus
ENSSARG00000006940
I
0.849
MEX3C
Erinaceus europaeus
ENSEEUG00000010864
I
0.849
MEX3C
Danio rerio
ENSDARG00000068971
I
0.830
MEX3B
Otolemur garnettii
ENSOGAG00000016362
I
0.822
PHUM418100
Pediculus humanus
PHUM418100
I
0.821
e_gw1.3.1475.1
Trichoplax adhaerens
e_gw1.3.1475.1
I
0.783
MEX3A
Taeniopygia guttata
ENSTGUG00000003692
N
0.774
MEX3A
Gallus gallus
ENSGALG00000014016
N
0.774
MEX3A
Meleagris gallopavo
ENSMGAG00000015563
N
0.774
MEX3A
Anolis carolinensis
ENSACAG00000003739
N
0.774
BGIBMGA012436
Bombyx mori
BGIBMGA012436
I
0.774
mex3a
Xenopus tropicalis
ENSXETG00000012704
N
0.774
MEX3A
Takifugu rubripes
ENSTRUG00000007796
N
0.764
MEX3A
Sorex araneus
ENSSARG00000009868
N
0.764
MEX3A
Pan troglodytes
ENSPTRG00000030373
N
0.764
e_gw1.312.50.1
Capitella teleta
e_gw1.312.50.1
I
0.764
MEX3A
Tetraodon nigroviridis
ENSTNIG00000004473
N
0.764
LOC100063974
Equus caballus
ENSECAG00000007279
N
0.764
MEX3A
Loxodonta africana
ENSLAFG00000009220
N
0.764
MEX3A
Gasterosteus aculeatus
ENSGACG00000013282
N
0.764
MEX3A
Myotis lucifugus
ENSMLUG00000010185
N
0.764
MEX3D
Gorilla gorilla
ENSGGOG00000001083
I
0.762
MEX3D
Pan troglodytes
ENSPTRG00000010208
I
0.762
Mex3d
Rattus norvegicus
ENSRNOG00000030830
I
0.762
MEX3B
Cavia porcellus
ENSCPOG00000023663
I
0.762
ENSPPYG00000009324
Pongo pygmaeus
ENSPPYG00000009324
I
0.762
Mex3d
Mus musculus
ENSMUSG00000048696
I
0.762
estExt_fgenesh2_pg.C_2010087
Branchiostoma floridae
estExt_fgenesh2_pg.C_2010087
I
0.762
MEX3D
Homo sapiens
ENSG00000181588
I
0.762
MEX3D
Tursiops truncatus
ENSTTRG00000008132
I
0.762
AAI28670
Xenopus laevis
AAI28670
I
0.760
mex3c
Xenopus tropicalis
ENSXETG00000022367
I
0.760
MEX3B
Macaca mulatta
ENSMMUG00000018639
I
0.754
Ame_R007174
Ailuropoda melanoleuca
Ame_R007174
I
0.754
MEX3B
Gorilla gorilla
ENSGGOG00000000597
I
0.754
MEX3B
Equus caballus
ENSECAG00000013497
I
0.754
MEX3B
Callithrix jacchus
ENSCJAG00000008043
I
0.754
MEX3C
Oryzias latipes
ENSORLG00000004985
I
0.754
MEX3B
Pan troglodytes
ENSPTRG00000007373
I
0.754
ENSPPYG00000006723
Pongo pygmaeus
ENSPPYG00000006723
I
0.754
MEX3C
Procavia capensis
ENSPCAG00000009258
I
0.754
MEX3B
Ochotona princeps
ENSOPRG00000009604
I
0.754
MEX3B
Bos taurus
ENSBTAG00000016630
I
0.754
MEX3B
Pteropus vampyrus
ENSPVAG00000000093
I
0.754
ENSCPOG00000008241
Cavia porcellus
ENSCPOG00000008241
I
0.754
MEX3B
Homo sapiens
ENSG00000183496
I
0.754
MEX3C
Canis familiaris
ENSCAFG00000000162
I
0.752
MEX3B
Dasypus novemcinctus
ENSDNOG00000012736
I
0.750
MEX3C
Gorilla gorilla
ENSGGOG00000014875
I
0.746
MEX3C
Choloepus hoffmanni
ENSCHOG00000004915
I
0.746
LOC100410023
Callithrix jacchus
ENSCJAG00000001902
I
0.746
Ame_R004658
Ailuropoda melanoleuca
Ame_R004658
I
0.746
A1L3F4
Xenopus laevis
A1L3F4
I
0.746
MEX3B
Danio rerio
ENSDARG00000058369
I
0.746
BAH79688
Xenopus laevis
BAH79688
I
0.746
AAI30070
Xenopus laevis
AAI30070
I
0.746
MEX3C
Cavia porcellus
ENSCPOG00000009646
I
0.746
MEX3C
Tursiops truncatus
ENSTTRG00000004570
I
0.746
MEX3D
Taeniopygia guttata
ENSTGUG00000000201
I
0.746
Mex3c
Mus musculus
ENSMUSG00000037253
I
0.746
MEX3C
Pteropus vampyrus
ENSPVAG00000015135
I
0.746
Mex3c
Rattus norvegicus
ENSRNOG00000015777
I
0.746
MEX3C
Monodelphis domestica
ENSMODG00000011001
I
0.746
MEX3C
Macaca mulatta
ENSMMUG00000023652
I
0.746
MEX3C
Dasypus novemcinctus
ENSDNOG00000006544
I
0.746
MEX3C
Pan troglodytes
ENSPTRG00000010029
I
0.746
MEX3C
Homo sapiens
ENSG00000176624
I
0.746
MEX3C
Loxodonta africana
ENSLAFG00000027818
I
0.746
MEX3B
Macropus eugenii
ENSMEUG00000002402
I
0.746
ENSOCUG00000012549
Oryctolagus cuniculus
ENSOCUG00000012549
I
0.746
MEX3C
Equus caballus
ENSECAG00000021727
I
0.746
MEX3B
Tetraodon nigroviridis
ENSTNIG00000003398
I
0.738
MEX3C
Gasterosteus aculeatus
ENSGACG00000007490
I
0.738
MEX3D
Macropus eugenii
ENSMEUG00000016404
I
0.738
MEX3D
Monodelphis domestica
ENSMODG00000004116
I
0.738
AAI42552
Xenopus laevis
AAI42552
I
0.730
MEX3D
Tetraodon nigroviridis
ENSTNIG00000015325
I
0.730
AAI30114
Xenopus laevis
AAI30114
I
0.721
AAI33220
Xenopus laevis
AAI33220
I
0.721
estExt_Genewise1.C_sca_540218
Lottia gigantea
estExt_Genewise1.C_sca_540218
I
0.721
MEX3D
Gasterosteus aculeatus
ENSGACG00000015299
I
0.721
MEX3B
Gasterosteus aculeatus
ENSGACG00000012530
I
0.713
143653
Helobdella robusta
143653
N
0.708
ENSCING00000002603
Ciona intestinalis
ENSCING00000002603
I
0.705
amel4_ncbi_hmm6985
Apis mellifera
amel4_ncbi_hmm6985
I
0.705
nasonia_NCBI_hmm456104
Nasonia vitripennis
nasonia_NCBI_hmm456104
I
0.705
MEX3D
Ornithorhynchus anatinus
ENSOANG00000011764
I
0.705