ENSCING00000002603 (Ciona intestinalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSCING00000002603 T18510_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CG11360
M122_0.6 		Drosophila melanogaster GAGUDW RNAcompete
Ray et al.(2013)
RNCMPT00129 		0.852
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000005309 KH 60 120
ENSCINP00000005309 KH 159 218

Links

Other KH family RBPs
Other Ciona intestinalis RBPs

162 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000006723 Pongo pygmaeus ENSPPYG00000006723 I 0.950
MEX3B Pan troglodytes ENSPTRG00000007373 I 0.950
MEX3B Pteropus vampyrus ENSPVAG00000000093 I 0.950
MEX3B Homo sapiens ENSG00000183496 I 0.950
MEX3B Ochotona princeps ENSOPRG00000009604 I 0.950
MEX3B Macaca mulatta ENSMMUG00000018639 I 0.950
MEX3B Gorilla gorilla ENSGGOG00000000597 I 0.950
MEX3B Monodelphis domestica ENSMODG00000019387 I 0.950
MEX3B Loxodonta africana ENSLAFG00000006027 I 0.950
MEX3B Equus caballus ENSECAG00000013497 I 0.950
MEX3B Callithrix jacchus ENSCJAG00000008043 I 0.950
Ame_R007174 Ailuropoda melanoleuca Ame_R007174 I 0.950
MEX3B Bos taurus ENSBTAG00000016630 I 0.950
ENSCPOG00000008241 Cavia porcellus ENSCPOG00000008241 I 0.943
MEX3C Procavia capensis ENSPCAG00000009258 I 0.942
estExt_Genewise1.C_sca_540218 Lottia gigantea estExt_Genewise1.C_sca_540218 I 0.942
MEX3B Danio rerio ENSDARG00000058369 I 0.942
estExt_fgenesh2_pg.C_2010087 Branchiostoma floridae estExt_fgenesh2_pg.C_2010087 I 0.942
MEX3B Macropus eugenii ENSMEUG00000002402 I 0.942
MEX3C Choloepus hoffmanni ENSCHOG00000004915 I 0.934
Mex3c Mus musculus ENSMUSG00000037253 I 0.934
MEX3C Monodelphis domestica ENSMODG00000011001 I 0.934
MEX3C Loxodonta africana ENSLAFG00000027818 I 0.934
MEX3C Macaca mulatta ENSMMUG00000023652 I 0.934
ENSOCUG00000012549 Oryctolagus cuniculus ENSOCUG00000012549 I 0.934
AAI30070 Xenopus laevis AAI30070 I 0.934
MEX3B Tetraodon nigroviridis ENSTNIG00000003398 I 0.934
MEX3B Takifugu rubripes ENSTRUG00000000367 I 0.934
MEX3C Tursiops truncatus ENSTTRG00000004570 I 0.934
Mex3c Rattus norvegicus ENSRNOG00000015777 I 0.934
MEX3C Pan troglodytes ENSPTRG00000010029 I 0.934
Ame_R004658 Ailuropoda melanoleuca Ame_R004658 I 0.934
A1L3F4 Xenopus laevis A1L3F4 I 0.934
BAH79688 Xenopus laevis BAH79688 I 0.934
MEX3C Pteropus vampyrus ENSPVAG00000015135 I 0.934
MEX3C Homo sapiens ENSG00000176624 I 0.934
MEX3C Equus caballus ENSECAG00000021727 I 0.934
MEX3C Cavia porcellus ENSCPOG00000009646 I 0.934
MEX3C Dasypus novemcinctus ENSDNOG00000006544 I 0.934
MEX3C Gorilla gorilla ENSGGOG00000014875 I 0.934
LOC100410023 Callithrix jacchus ENSCJAG00000001902 I 0.934
mex3c Xenopus tropicalis ENSXETG00000022367 I 0.926
amel4_ncbi_hmm6985 Apis mellifera amel4_ncbi_hmm6985 I 0.926
AAI28670 Xenopus laevis AAI28670 I 0.926
MEX3C Oryzias latipes ENSORLG00000004985 I 0.926
MEX3C Takifugu rubripes ENSTRUG00000011888 I 0.917
nasonia_NCBI_hmm456104 Nasonia vitripennis nasonia_NCBI_hmm456104 I 0.917
MEX3B Dasypus novemcinctus ENSDNOG00000012736 I 0.909
MEX3C Gasterosteus aculeatus ENSGACG00000007490 I 0.909
e_gw1.15.409.1 Daphnia pulex e_gw1.15.409.1 I 0.909
MEX3C Canis familiaris ENSCAFG00000000162 I 0.909
MEX3B Gasterosteus aculeatus ENSGACG00000012530 I 0.901
XP_001175528.1 Strongylocentrotus purpuratus XP_001175528.1 I 0.901
XP_786425.2 Strongylocentrotus purpuratus XP_786425.2 I 0.901
MEX3D Monodelphis domestica ENSMODG00000004116 I 0.877
gw.320.9.1 Nematostella vectensis gw.320.9.1 I 0.877
MEX3D Macropus eugenii ENSMEUG00000016404 I 0.877
MEX3D Taeniopygia guttata ENSTGUG00000000201 I 0.877
GK13594 Drosophila willistoni FBgn0215602 I 0.877
AAI30196 Xenopus laevis AAI30196 I 0.869
MEX3D Tetraodon nigroviridis ENSTNIG00000015325 I 0.869
MEX3D Takifugu rubripes ENSTRUG00000007986 I 0.869
XP_002168292.1 Hydra magnipapillata XP_002168292.1 I 0.869
GH23938 Drosophila grimshawi FBgn0131395 I 0.869
GJ18673 Drosophila virilis FBgn0205827 I 0.869
ENSPPYG00000009324 Pongo pygmaeus ENSPPYG00000009324 I 0.861
MEX3D Pan troglodytes ENSPTRG00000010208 I 0.861
MEX3A Danio rerio ENSDARG00000076638 I 0.861
Mex3d Rattus norvegicus ENSRNOG00000030830 I 0.861
MEX3B Cavia porcellus ENSCPOG00000023663 I 0.861
MEX3D Tursiops truncatus ENSTTRG00000008132 I 0.861
MEX3D Homo sapiens ENSG00000181588 I 0.861
MEX3D Gasterosteus aculeatus ENSGACG00000015299 I 0.861
Mex3d Mus musculus ENSMUSG00000048696 I 0.861
MEX3D Gorilla gorilla ENSGGOG00000001083 I 0.861
GD24410 Drosophila simulans FBgn0195748 I 0.852
ENSPPYG00000000729 Pongo pygmaeus ENSPPYG00000000729 I 0.852
GE14558 Drosophila yakuba FBgn0232157 I 0.852
CG11360 Drosophila melanogaster FBgn0039920 D 0.852
GG16398 Drosophila erecta FBgn0108630 I 0.852
GA10947-RA Drosophila pseudoobscura FBgn0071003 I 0.852
Mex3a Dipodomys ordii ENSDORG00000002921 I 0.852
MEX3A Oryctolagus cuniculus ENSOCUG00000005640 I 0.852
GL18139 Drosophila persimilis FBgn0155742 I 0.852
GM26809 Drosophila sechellia FBgn0181661 I 0.852
MEX3A Monodelphis domestica ENSMODG00000016954 I 0.852
MEX3A Gorilla gorilla ENSGGOG00000004513 I 0.852
MEX3A Macaca mulatta ENSMMUG00000022307 I 0.852
Ame_R015561 Ailuropoda melanoleuca Ame_R015561 I 0.852
MEX3A Bos taurus ENSBTAG00000019158 I 0.852
LOC100410413 Callithrix jacchus ENSCJAG00000007711 I 0.852
MEX3A Cavia porcellus ENSCPOG00000020219 I 0.852
MEX3A Ochotona princeps ENSOPRG00000002937 I 0.852
AAI42552 Xenopus laevis AAI42552 I 0.852
GF20555 Drosophila ananassae FBgn0097561 I 0.844
AAI33220 Xenopus laevis AAI33220 I 0.844
MEX3A Tursiops truncatus ENSTTRG00000013346 I 0.844
MEX3D Ornithorhynchus anatinus ENSOANG00000011764 I 0.844
AAI30114 Xenopus laevis AAI30114 I 0.844
Aqu1.215178 Amphimedon queenslandica Aqu1.215178 I 0.820
mex-3 Caenorhabditis elegans F53G12.5 I 0.811
CRE03823 Caenorhabditis remanei CRE03823 I 0.811
CBN20397 Caenorhabditis brenneri CBN20397 I 0.803
CBN24563 Caenorhabditis brenneri CBN24563 I 0.803
MEX3A Pteropus vampyrus ENSPVAG00000010333 I 0.795
ENSOCUG00000014295 Oryctolagus cuniculus ENSOCUG00000014295 I 0.795
CJA18034 Caenorhabditis japonica CJA18034 I 0.795
Mex3b Mus musculus ENSMUSG00000057706 I 0.793
MEX3B Oryctolagus cuniculus ENSOCUG00000011603 I 0.793
D3ZFL6_RAT Rattus norvegicus ENSRNOG00000025142 I 0.793
MEX3B Canis familiaris ENSCAFG00000013759 I 0.793
CBG05100 Caenorhabditis briggsae CBG05100 I 0.787
MEX3A Microcebus murinus ENSMICG00000002233 I 0.787
MEX3B Sorex araneus ENSSARG00000006007 I 0.785
MEX3B Anolis carolinensis ENSACAG00000011072 I 0.785
MEX3B Procavia capensis ENSPCAG00000014150 I 0.785
MEX3C Echinops telfairi ENSETEG00000003647 I 0.777
Q2YDI4_BOVIN Bos taurus ENSBTAG00000014886 I 0.777
MEX3C Ornithorhynchus anatinus ENSOANG00000008116 I 0.777
MEX3C Anolis carolinensis ENSACAG00000010265 I 0.777
MEX3D Meleagris gallopavo ENSMGAG00000002325 I 0.770
PHUM418100 Pediculus humanus PHUM418100 I 0.770
MEX3C Erinaceus europaeus ENSEEUG00000010864 I 0.769
MEX3C Macropus eugenii ENSMEUG00000015929 I 0.769
Mex3c Dipodomys ordii ENSDORG00000007962 I 0.769
MEX3C Microcebus murinus ENSMICG00000005815 I 0.769
MEX3C Vicugna pacos ENSVPAG00000003137 I 0.769
MEX3C Tupaia belangeri ENSTBEG00000014438 I 0.769
MEX3C Sorex araneus ENSSARG00000006940 I 0.769
MEX3C Myotis lucifugus ENSMLUG00000012585 I 0.769
MEX3B Otolemur garnettii ENSOGAG00000016362 I 0.760
MEX3D Gallus gallus ENSGALG00000001106 I 0.760
SNAPOd2T00016811001 Oikopleura dioica SNAPOd2T00016811001 I 0.754
MEX3D Bos taurus ENSBTAG00000044028 I 0.744
MEX3D Canis familiaris ENSCAFG00000023712 I 0.744
AAEL012708 Aedes aegypti AAEL012708 I 0.738
CPIJ010634 Culex quinquefasciatus CPIJ010634 I 0.738
CpipJ_CPIJ010634 Culex pipiens CpipJ_CPIJ010634 I 0.738
AGAP013259 Anopheles gambiae AGAP013259 I 0.738
Ame_R011921 Ailuropoda melanoleuca Ame_R011921 I 0.738
MEX3D Felis catus ENSFCAG00000002615 I 0.736
MEX3D Ochotona princeps ENSOPRG00000008708 I 0.736
MEX3C Danio rerio ENSDARG00000068971 I 0.736
BGIBMGA012436 Bombyx mori BGIBMGA012436 I 0.730
MEX3D Procavia capensis ENSPCAG00000010972 I 0.727
MEX3A Meleagris gallopavo ENSMGAG00000015563 N 0.721
MEX3A Taeniopygia guttata ENSTGUG00000003692 N 0.721
MEX3A Gallus gallus ENSGALG00000014016 N 0.721
e_gw1.312.50.1 Capitella teleta e_gw1.312.50.1 I 0.719
MEX3A Anolis carolinensis ENSACAG00000003739 N 0.713
mex3a Xenopus tropicalis ENSXETG00000012704 N 0.713
MEX3D Myotis lucifugus ENSMLUG00000017018 N 0.713
e_gw1.3.1475.1 Trichoplax adhaerens e_gw1.3.1475.1 I 0.713
MEX3A Pan troglodytes ENSPTRG00000030373 N 0.711
MEX3A Myotis lucifugus ENSMLUG00000010185 N 0.711
MEX3A Gasterosteus aculeatus ENSGACG00000013282 N 0.711
MEX3A Sorex araneus ENSSARG00000009868 N 0.711
MEX3A Loxodonta africana ENSLAFG00000009220 N 0.705
MEX3A Takifugu rubripes ENSTRUG00000007796 N 0.705
MEX3A Tetraodon nigroviridis ENSTNIG00000004473 N 0.705
LOC100063974 Equus caballus ENSECAG00000007279 N 0.705
MKNK2 Callithrix jacchus ENSCJAG00000000539 I 0.705