CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MEX3D
(
Homo sapiens
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSG00000181588
T18809_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG11360
M122_0.6
Drosophila melanogaster
GAGUDW
RNAcompete
Ray et al.(2013)
RNCMPT00129
0.844
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000347885
KH
70
130
TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSP00000373476
KH
180
240
TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSP00000373476
KH
275
334
TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI
ENSP00000384398
KH
180
240
TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSP00000384398
KH
275
334
TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI
ENSP00000385160
KH
2
62
TECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREI
ENSP00000385160
KH
97
156
TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI
Links
Other
KH
family RBPs
Other
Homo sapiens
RBPs
148 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMMUG00000028939
Macaca mulatta
ENSMMUG00000028939
N
1.000
MEX3B
Cavia porcellus
ENSCPOG00000023663
I
1.000
MEX3D
Tursiops truncatus
ENSTTRG00000008132
I
1.000
ENSPPYG00000009324
Pongo pygmaeus
ENSPPYG00000009324
I
1.000
Mex3d
Rattus norvegicus
ENSRNOG00000030830
I
1.000
MEX3D
Pan troglodytes
ENSPTRG00000010208
I
1.000
MEX3D
Gorilla gorilla
ENSGGOG00000001083
I
1.000
Mex3d
Mus musculus
ENSMUSG00000048696
I
1.000
MEX3D
Taeniopygia guttata
ENSTGUG00000000201
I
0.967
MEX3D
Monodelphis domestica
ENSMODG00000004116
I
0.967
MEX3D
Macropus eugenii
ENSMEUG00000016404
I
0.967
MEX3D
Takifugu rubripes
ENSTRUG00000007986
I
0.959
MEX3D
Tetraodon nigroviridis
ENSTNIG00000015325
I
0.959
MEX3D
Gasterosteus aculeatus
ENSGACG00000015299
I
0.950
AAI42552
Xenopus laevis
AAI42552
I
0.950
AAI30114
Xenopus laevis
AAI30114
I
0.942
AAI33220
Xenopus laevis
AAI33220
I
0.942
ENSCPOG00000008241
Cavia porcellus
ENSCPOG00000008241
I
0.918
estExt_fgenesh2_pg.C_2010087
Branchiostoma floridae
estExt_fgenesh2_pg.C_2010087
I
0.918
MEX3B
Callithrix jacchus
ENSCJAG00000008043
I
0.910
MEX3C
Procavia capensis
ENSPCAG00000009258
I
0.910
MEX3B
Monodelphis domestica
ENSMODG00000019387
I
0.910
ENSPPYG00000006723
Pongo pygmaeus
ENSPPYG00000006723
I
0.910
Ame_R007174
Ailuropoda melanoleuca
Ame_R007174
I
0.910
MEX3B
Bos taurus
ENSBTAG00000016630
I
0.910
MEX3B
Pan troglodytes
ENSPTRG00000007373
I
0.910
MEX3B
Ochotona princeps
ENSOPRG00000009604
I
0.910
MEX3B
Homo sapiens
ENSG00000183496
I
0.910
MEX3B
Pteropus vampyrus
ENSPVAG00000000093
I
0.910
MEX3B
Gorilla gorilla
ENSGGOG00000000597
I
0.910
MEX3B
Loxodonta africana
ENSLAFG00000006027
I
0.910
MEX3B
Macaca mulatta
ENSMMUG00000018639
I
0.910
MEX3B
Equus caballus
ENSECAG00000013497
I
0.910
MEX3D
Ornithorhynchus anatinus
ENSOANG00000011764
I
0.909
MEX3C
Oryzias latipes
ENSORLG00000004985
I
0.902
MEX3C
Pan troglodytes
ENSPTRG00000010029
I
0.902
MEX3C
Pteropus vampyrus
ENSPVAG00000015135
I
0.902
Mex3c
Rattus norvegicus
ENSRNOG00000015777
I
0.902
MEX3C
Choloepus hoffmanni
ENSCHOG00000004915
I
0.902
MEX3C
Dasypus novemcinctus
ENSDNOG00000006544
I
0.902
MEX3B
Danio rerio
ENSDARG00000058369
I
0.902
MEX3C
Cavia porcellus
ENSCPOG00000009646
I
0.902
Ame_R004658
Ailuropoda melanoleuca
Ame_R004658
I
0.902
MEX3B
Macropus eugenii
ENSMEUG00000002402
I
0.902
MEX3C
Gorilla gorilla
ENSGGOG00000014875
I
0.902
MEX3C
Loxodonta africana
ENSLAFG00000027818
I
0.902
MEX3C
Homo sapiens
ENSG00000176624
I
0.902
MEX3C
Macaca mulatta
ENSMMUG00000023652
I
0.902
MEX3C
Equus caballus
ENSECAG00000021727
I
0.902
MEX3C
Tursiops truncatus
ENSTTRG00000004570
I
0.902
ENSOCUG00000012549
Oryctolagus cuniculus
ENSOCUG00000012549
I
0.902
LOC100410023
Callithrix jacchus
ENSCJAG00000001902
I
0.902
MEX3C
Monodelphis domestica
ENSMODG00000011001
I
0.902
Mex3c
Mus musculus
ENSMUSG00000037253
I
0.902
MEX3B
Tetraodon nigroviridis
ENSTNIG00000003398
I
0.893
mex3c
Xenopus tropicalis
ENSXETG00000022367
I
0.893
MEX3C
Takifugu rubripes
ENSTRUG00000011888
I
0.893
MEX3B
Takifugu rubripes
ENSTRUG00000000367
I
0.893
BAH79688
Xenopus laevis
BAH79688
I
0.893
AAI30070
Xenopus laevis
AAI30070
I
0.893
AAI28670
Xenopus laevis
AAI28670
I
0.893
A1L3F4
Xenopus laevis
A1L3F4
I
0.893
MEX3C
Gasterosteus aculeatus
ENSGACG00000007490
I
0.885
estExt_Genewise1.C_sca_540218
Lottia gigantea
estExt_Genewise1.C_sca_540218
I
0.877
MEX3C
Canis familiaris
ENSCAFG00000000162
I
0.877
MEX3B
Dasypus novemcinctus
ENSDNOG00000012736
I
0.869
ENSCING00000002603
Ciona intestinalis
ENSCING00000002603
I
0.861
MEX3B
Gasterosteus aculeatus
ENSGACG00000012530
I
0.861
amel4_ncbi_hmm6985
Apis mellifera
amel4_ncbi_hmm6985
I
0.861
nasonia_NCBI_hmm456104
Nasonia vitripennis
nasonia_NCBI_hmm456104
I
0.861
XP_786425.2
Strongylocentrotus purpuratus
XP_786425.2
I
0.852
gw.320.9.1
Nematostella vectensis
gw.320.9.1
I
0.852
XP_001175528.1
Strongylocentrotus purpuratus
XP_001175528.1
I
0.852
GK13594
Drosophila willistoni
FBgn0215602
I
0.844
GE14558
Drosophila yakuba
FBgn0232157
I
0.844
e_gw1.15.409.1
Daphnia pulex
e_gw1.15.409.1
I
0.844
XP_002168292.1
Hydra magnipapillata
XP_002168292.1
I
0.844
GJ18673
Drosophila virilis
FBgn0205827
I
0.844
GA10947-RA
Drosophila pseudoobscura
FBgn0071003
I
0.844
GH23938
Drosophila grimshawi
FBgn0131395
I
0.844
CG11360
Drosophila melanogaster
FBgn0039920
D
0.844
GD24410
Drosophila simulans
FBgn0195748
I
0.844
GG16398
Drosophila erecta
FBgn0108630
I
0.844
GL18139
Drosophila persimilis
FBgn0155742
I
0.844
GM26809
Drosophila sechellia
FBgn0181661
I
0.844
AAI30196
Xenopus laevis
AAI30196
I
0.836
GF20555
Drosophila ananassae
FBgn0097561
I
0.836
MEX3A
Danio rerio
ENSDARG00000076638
I
0.828
MEX3A
Macaca mulatta
ENSMMUG00000022307
I
0.820
ENSPPYG00000000729
Pongo pygmaeus
ENSPPYG00000000729
I
0.820
MEX3A
Monodelphis domestica
ENSMODG00000016954
I
0.820
LOC100410413
Callithrix jacchus
ENSCJAG00000007711
I
0.820
MEX3A
Bos taurus
ENSBTAG00000019158
I
0.820
MEX3A
Oryctolagus cuniculus
ENSOCUG00000005640
I
0.820
MEX3A
Ochotona princeps
ENSOPRG00000002937
I
0.820
MEX3A
Cavia porcellus
ENSCPOG00000020219
I
0.820
MEX3A
Gorilla gorilla
ENSGGOG00000004513
I
0.820
Ame_R015561
Ailuropoda melanoleuca
Ame_R015561
I
0.820
Mex3a
Dipodomys ordii
ENSDORG00000002921
I
0.820
MEX3A
Tursiops truncatus
ENSTTRG00000013346
I
0.811
MEX3D
Bos taurus
ENSBTAG00000044028
I
0.803
MEX3D
Canis familiaris
ENSCAFG00000023712
I
0.803
MEX3D
Felis catus
ENSFCAG00000002615
I
0.803
Ame_R011921
Ailuropoda melanoleuca
Ame_R011921
I
0.803
MEX3D
Procavia capensis
ENSPCAG00000010972
I
0.795
MEX3D
Ochotona princeps
ENSOPRG00000008708
I
0.795
MEX3D
Myotis lucifugus
ENSMLUG00000017018
N
0.787
CRE03823
Caenorhabditis remanei
CRE03823
I
0.787
MEX3D
Meleagris gallopavo
ENSMGAG00000002325
I
0.787
CBN24563
Caenorhabditis brenneri
CBN24563
I
0.779
mex-3
Caenorhabditis elegans
F53G12.5
I
0.779
CBN20397
Caenorhabditis brenneri
CBN20397
I
0.779
MEX3D
Gallus gallus
ENSGALG00000001106
I
0.770
Aqu1.215178
Amphimedon queenslandica
Aqu1.215178
I
0.770
CBG05100
Caenorhabditis briggsae
CBG05100
I
0.770
ENSOCUG00000014295
Oryctolagus cuniculus
ENSOCUG00000014295
I
0.762
MKNK2
Callithrix jacchus
ENSCJAG00000000539
I
0.762
CJA18034
Caenorhabditis japonica
CJA18034
I
0.762
MEX3A
Pteropus vampyrus
ENSPVAG00000010333
I
0.762
MEX3C
Danio rerio
ENSDARG00000068971
I
0.760
MEX3B
Procavia capensis
ENSPCAG00000014150
I
0.754
MEX3B
Sorex araneus
ENSSARG00000006007
I
0.754
MEX3C
Echinops telfairi
ENSETEG00000003647
I
0.754
Mex3b
Mus musculus
ENSMUSG00000057706
I
0.754
D3ZFL6_RAT
Rattus norvegicus
ENSRNOG00000025142
I
0.754
MEX3B
Canis familiaris
ENSCAFG00000013759
I
0.754
MEX3B
Oryctolagus cuniculus
ENSOCUG00000011603
I
0.754
Mex3c
Dipodomys ordii
ENSDORG00000007962
I
0.746
MEX3C
Tupaia belangeri
ENSTBEG00000014438
I
0.746
MEX3C
Sorex araneus
ENSSARG00000006940
I
0.746
MEX3C
Macropus eugenii
ENSMEUG00000015929
I
0.746
MEX3C
Vicugna pacos
ENSVPAG00000003137
I
0.746
MEX3B
Anolis carolinensis
ENSACAG00000011072
I
0.746
MEX3C
Erinaceus europaeus
ENSEEUG00000010864
I
0.746
MEX3A
Microcebus murinus
ENSMICG00000002233
I
0.746
MEX3C
Anolis carolinensis
ENSACAG00000010265
I
0.746
Q2YDI4_BOVIN
Bos taurus
ENSBTAG00000014886
I
0.746
MEX3C
Myotis lucifugus
ENSMLUG00000012585
I
0.746
MEX3C
Microcebus murinus
ENSMICG00000005815
I
0.746
MEX3C
Ornithorhynchus anatinus
ENSOANG00000008116
I
0.746
CpipJ_CPIJ010634
Culex pipiens
CpipJ_CPIJ010634
I
0.730
CPIJ010634
Culex quinquefasciatus
CPIJ010634
I
0.730
AAEL012708
Aedes aegypti
AAEL012708
I
0.730
AGAP013259
Anopheles gambiae
AGAP013259
I
0.730
81412
Helobdella robusta
81412
N
0.721
MEX3B
Otolemur garnettii
ENSOGAG00000016362
I
0.713
PHUM418100
Pediculus humanus
PHUM418100
I
0.705