PK11972.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK11972.1 T23979_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK11972.1 PUF 722 756
PK11972.1 PUF 758 792
PK11972.1 PUF 794 828
PK11972.1 PUF 830 864
PK11972.1 PUF 866 896
PK11972.1 PUF 904 937
PK11972.1 PUF 939 973
PK11972.1 PUF 981 1014

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.793
MDP0000277305 Malus x domestica MDP0000277305 N 0.789
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.789
ppa016404m Prunus persica ppa016404m N 0.776
mgf006786m Mimulus guttatus mgf006786m N 0.765
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.761
MDP0000313902 Malus x domestica MDP0000313902 N 0.754
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.751
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.750
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.744
ppa000898m Prunus persica ppa000898m N 0.740
MDP0000265231 Malus x domestica MDP0000265231 N 0.723
APUM5 Arabidopsis thaliana AT3G20250-TAIR-G N 0.720
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.720
PK12245.1 Cannabis sativa PK12245.1 N 0.719
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.702