105390 (Helobdella robusta)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 105390 T24669_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.709
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.709
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.709
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.705
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.705
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.704
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.704
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.704
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.704
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.704
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.704
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
105390 PUF 88 122
105390 PUF 124 155
105390 PUF 160 189
105390 PUF 196 230
105390 PUF 232 266
105390 PUF 268 302
105390 PUF 304 338
105390 PUF 354 381

Links

Other PUF family RBPs
Other Helobdella robusta RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.730
PUM2 Oryzias latipes ENSORLG00000012611 I 0.721
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.718
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.718
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.717
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.716
GF18428 Drosophila ananassae FBgn0095446 I 0.716
GE24797 Drosophila yakuba FBgn0241899 I 0.716
GG17394 Drosophila erecta FBgn0109620 I 0.716
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.716
PUM2 Homo sapiens ENSG00000055917 D 0.715
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.715
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.715
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.715
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.715
PUM2 Canis familiaris ENSCAFG00000003839 I 0.715
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.715
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.715
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.714
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.714
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.714
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.713
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.712
GK14049 Drosophila willistoni FBgn0216055 I 0.712
pum Drosophila melanogaster FBgn0003165 D 0.712
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.712
GM26283 Drosophila sechellia FBgn0181138 I 0.712
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.712
Pum2 Mus musculus ENSMUSG00000020594 D 0.712
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.712
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.711
PUM2 Equus caballus ENSECAG00000021930 I 0.710
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.710
PUM2 Bos taurus ENSBTAG00000011155 I 0.710
PUM2 Sus scrofa ENSSSCG00000008600 I 0.710
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.710
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.710
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.710
GH15257 Drosophila grimshawi FBgn0122732 I 0.709
GJ10105 Drosophila virilis FBgn0197393 I 0.709
AAEL012420 Aedes aegypti AAEL012420 I 0.709
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.708
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.708
AGAP003914 Anopheles gambiae AGAP003914 I 0.708
GL22345 Drosophila persimilis FBgn0159937 I 0.705
GI22503 Drosophila mojavensis FBgn0145231 I 0.705
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.704
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.704
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.703
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.701