PUM2 (Takifugu rubripes)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSTRUG00000018167 T24288_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.949
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.949
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.949
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.945
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.945
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.869
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.869
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.799
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.799
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.799
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.799
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.799
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.799
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.799
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000046476 PUF 838 871
ENSTRUP00000046476 PUF 873 905
ENSTRUP00000046476 PUF 909 943
ENSTRUP00000046476 PUF 945 979
ENSTRUP00000046476 PUF 981 1015
ENSTRUP00000046476 PUF 1017 1051
ENSTRUP00000046476 PUF 1053 1086
ENSTRUP00000046476 PUF 1099 1130
ENSTRUP00000046477 PUF 762 795
ENSTRUP00000046477 PUF 797 829
ENSTRUP00000046477 PUF 833 867
ENSTRUP00000046477 PUF 869 903
ENSTRUP00000046477 PUF 905 939
ENSTRUP00000046477 PUF 941 975
ENSTRUP00000046477 PUF 977 1010
ENSTRUP00000046477 PUF 1023 1054
ENSTRUP00000046478 PUF 815 848
ENSTRUP00000046478 PUF 850 882
ENSTRUP00000046478 PUF 886 918
ENSTRUP00000046478 PUF 962 996
ENSTRUP00000046478 PUF 998 1032
ENSTRUP00000046478 PUF 1034 1068
ENSTRUP00000046478 PUF 1070 1103
ENSTRUP00000046478 PUF 1116 1147

Links

Other PUF family RBPs
Other Takifugu rubripes RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.996
PUM2 Oryzias latipes ENSORLG00000012611 I 0.978
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.952
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.949
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.949
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.949
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.949
PUM2 Canis familiaris ENSCAFG00000003839 I 0.949
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.949
PUM2 Homo sapiens ENSG00000055917 D 0.949
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.949
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.949
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.945
Pum2 Mus musculus ENSMUSG00000020594 D 0.945
PUM2 Sus scrofa ENSSSCG00000008600 I 0.942
PUM2 Bos taurus ENSBTAG00000011155 I 0.942
PUM2 Equus caballus ENSECAG00000021930 I 0.942
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.942
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.938
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.935
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.935
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.935
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.935
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.934
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.927
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.916
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.916
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.912
BAB20864 Xenopus laevis BAB20864 I 0.886
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.883
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.883
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.883
PUM1 Sus scrofa ENSSSCG00000003591 I 0.882
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.880
PUM1 Microcebus murinus ENSMICG00000007713 I 0.879
BAC57980 Xenopus laevis BAC57980 I 0.879
AAH80379 Xenopus laevis AAH80379 I 0.879
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.879
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.879
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.879
PUM1 Homo sapiens ENSG00000134644 D 0.879
PUM1 Oryzias latipes ENSORLG00000011482 I 0.875
AAL14121 Xenopus laevis AAL14121 I 0.875
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.875
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.875
PUM1 Canis familiaris ENSCAFG00000011205 I 0.875
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.875
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.875
PUM1 Bos taurus ENSBTAG00000018979 I 0.872
PUM1 Sorex araneus ENSSARG00000003055 I 0.871
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.871
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.871
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.871
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.869
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.868
Pum1 Mus musculus ENSMUSG00000028580 I 0.868
PUM1 Equus caballus ENSECAG00000021369 I 0.865
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.864
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.864
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.857
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.832
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.832
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.830
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.813
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.802
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.802
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.801
GE24797 Drosophila yakuba FBgn0241899 I 0.799
GK14049 Drosophila willistoni FBgn0216055 I 0.799
GM26283 Drosophila sechellia FBgn0181138 I 0.799
pum Drosophila melanogaster FBgn0003165 D 0.799
GG17394 Drosophila erecta FBgn0109620 I 0.799
GF18428 Drosophila ananassae FBgn0095446 I 0.799
AAEL012420 Aedes aegypti AAEL012420 I 0.795
GH15257 Drosophila grimshawi FBgn0122732 I 0.795
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.795
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.794
AGAP003914 Anopheles gambiae AGAP003914 I 0.794
PHUM490070 Pediculus humanus PHUM490070 I 0.794
GJ10105 Drosophila virilis FBgn0197393 I 0.791
GI22503 Drosophila mojavensis FBgn0145231 I 0.791
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.790
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.788
GL22345 Drosophila persimilis FBgn0159937 I 0.788
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.781
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.776
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.773
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.748
105390 Helobdella robusta 105390 I 0.714