estExt_Genewise1Plus.C_sca_670070 (Lottia gigantea)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 estExt_Genewise1Plus.C_sca_670070 T24823_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.844
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.844
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.844
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.841
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.841
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.795
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.795
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.795
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.795
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.795
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.795
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.795
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.783
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_sca_670070 PUF 111 145
estExt_Genewise1Plus.C_sca_670070 PUF 147 180
estExt_Genewise1Plus.C_sca_670070 PUF 183 214
estExt_Genewise1Plus.C_sca_670070 PUF 219 253
estExt_Genewise1Plus.C_sca_670070 PUF 255 289
estExt_Genewise1Plus.C_sca_670070 PUF 291 325
estExt_Genewise1Plus.C_sca_670070 PUF 327 361
estExt_Genewise1Plus.C_sca_670070 PUF 372 404

Links

Other PUF family RBPs
Other Lottia gigantea RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.859
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.844
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.844
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.844
PUM2 Homo sapiens ENSG00000055917 D 0.844
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.844
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.844
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.844
PUM2 Canis familiaris ENSCAFG00000003839 I 0.844
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.844
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.844
PUM2 Equus caballus ENSECAG00000021930 I 0.841
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.841
PUM2 Bos taurus ENSBTAG00000011155 I 0.841
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.841
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.841
PUM2 Sus scrofa ENSSSCG00000008600 I 0.841
Pum2 Mus musculus ENSMUSG00000020594 D 0.841
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.841
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.841
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.838
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.838
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.837
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.836
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.830
PUM2 Oryzias latipes ENSORLG00000012611 I 0.829
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.828
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.828
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.826
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.826
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.822
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.815
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.813
BAB20864 Xenopus laevis BAB20864 I 0.811
PUM1 Oryzias latipes ENSORLG00000011482 I 0.808
PUM1 Microcebus murinus ENSMICG00000007713 I 0.804
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.804
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.804
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.804
AGAP003914 Anopheles gambiae AGAP003914 I 0.801
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.801
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.801
AAH80379 Xenopus laevis AAH80379 I 0.800
BAC57980 Xenopus laevis BAC57980 I 0.800
GG17394 Drosophila erecta FBgn0109620 I 0.799
GE24797 Drosophila yakuba FBgn0241899 I 0.799
GF18428 Drosophila ananassae FBgn0095446 I 0.799
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.798
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.798
AAL14121 Xenopus laevis AAL14121 I 0.796
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.795
AAEL012420 Aedes aegypti AAEL012420 I 0.795
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.795
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.795
pum Drosophila melanogaster FBgn0003165 D 0.795
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.795
GM26283 Drosophila sechellia FBgn0181138 I 0.795
GK14049 Drosophila willistoni FBgn0216055 I 0.795
GH15257 Drosophila grimshawi FBgn0122732 I 0.791
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.789
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.789
Pum1 Mus musculus ENSMUSG00000028580 I 0.789
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.789
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.789
PUM1 Homo sapiens ENSG00000134644 D 0.789
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.789
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.789
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.789
PUM1 Sorex araneus ENSSARG00000003055 I 0.789
PUM1 Canis familiaris ENSCAFG00000011205 I 0.789
GI22503 Drosophila mojavensis FBgn0145231 I 0.788
GJ10105 Drosophila virilis FBgn0197393 I 0.788
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.788
PUM1 Sus scrofa ENSSSCG00000003591 I 0.786
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.785
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.785
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.784
GL22345 Drosophila persimilis FBgn0159937 I 0.784
PUM1 Bos taurus ENSBTAG00000018979 I 0.783
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.783
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.783
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.783
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.782
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.781
PUM1 Equus caballus ENSECAG00000021369 I 0.780
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.778
PHUM490070 Pediculus humanus PHUM490070 I 0.766
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.722
105390 Helobdella robusta 105390 I 0.716