PUM2 (Sus scrofa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSSSCG00000008600 T24271_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.985
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.985
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.985
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.982
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.982
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.902
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.902
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.817
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.817
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.817
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.817
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.817
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.817
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.817
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000009171 PUF 725 759
ENSSSCP00000009171 PUF 761 793
ENSSSCP00000009171 PUF 797 831
ENSSSCP00000009171 PUF 833 867
ENSSSCP00000009171 PUF 869 903
ENSSSCP00000009171 PUF 905 939
ENSSSCP00000009171 PUF 941 975
ENSSSCP00000009171 PUF 987 1018

Links

Other PUF family RBPs
Other Sus scrofa RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 1.000
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 1.000
PUM2 Equus caballus ENSECAG00000021930 I 1.000
PUM2 Callithrix jacchus ENSCJAG00000007450 I 1.000
PUM2 Homo sapiens ENSG00000055917 D 1.000
PUM2 Bos taurus ENSBTAG00000011155 I 1.000
Pum2 Mus musculus ENSMUSG00000020594 D 0.996
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.993
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.989
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.989
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.989
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.989
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.985
PUM2 Canis familiaris ENSCAFG00000003839 I 0.985
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.985
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.985
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.985
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.985
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.982
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.978
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.971
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.964
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.953
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.949
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.942
PUM2 Oryzias latipes ENSORLG00000012611 I 0.935
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.931
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.927
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.920
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.920
BAB20864 Xenopus laevis BAB20864 I 0.913
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.913
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.913
PUM1 Microcebus murinus ENSMICG00000007713 I 0.909
BAC57980 Xenopus laevis BAC57980 I 0.909
PUM1 Oryzias latipes ENSORLG00000011482 I 0.909
AAH80379 Xenopus laevis AAH80379 I 0.909
PUM1 Bos taurus ENSBTAG00000018979 I 0.905
AAL14121 Xenopus laevis AAL14121 I 0.905
PUM1 Homo sapiens ENSG00000134644 D 0.902
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.902
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.902
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.898
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.898
PUM1 Equus caballus ENSECAG00000021369 I 0.898
PUM1 Canis familiaris ENSCAFG00000011205 I 0.898
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.895
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.895
Pum1 Mus musculus ENSMUSG00000028580 I 0.895
PUM1 Sorex araneus ENSSARG00000003055 I 0.895
PUM1 Sus scrofa ENSSSCG00000003591 I 0.895
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.895
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.895
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.895
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.891
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.891
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.887
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.887
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.887
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.869
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.853
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.853
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.841
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.827
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.819
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.819
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.817
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.817
GM26283 Drosophila sechellia FBgn0181138 I 0.817
GK14049 Drosophila willistoni FBgn0216055 I 0.817
GE24797 Drosophila yakuba FBgn0241899 I 0.817
GG17394 Drosophila erecta FBgn0109620 I 0.817
GF18428 Drosophila ananassae FBgn0095446 I 0.817
pum Drosophila melanogaster FBgn0003165 D 0.817
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.813
AAEL012420 Aedes aegypti AAEL012420 I 0.813
GH15257 Drosophila grimshawi FBgn0122732 I 0.813
AGAP003914 Anopheles gambiae AGAP003914 I 0.812
GJ10105 Drosophila virilis FBgn0197393 I 0.809
PHUM490070 Pediculus humanus PHUM490070 I 0.809
GI22503 Drosophila mojavensis FBgn0145231 I 0.806
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.805
GL22345 Drosophila persimilis FBgn0159937 I 0.802
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.799
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.795
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.795
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.788
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.753
105390 Helobdella robusta 105390 I 0.710