AGAP003914 (Anopheles gambiae)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 AGAP003914 T24002_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.888
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.888
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.885
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.885
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.885
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.885
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.885
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.805
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.805
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.805
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.805
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.805
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.773
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AGAP003914-PA PUF 424 458
AGAP003914-PA PUF 460 493
AGAP003914-PA PUF 496 530
AGAP003914-PA PUF 532 566
AGAP003914-PA PUF 568 602
AGAP003914-PA PUF 604 638
AGAP003914-PA PUF 640 674
AGAP003914-PA PUF 682 714
AGAP003914-PB PUF 933 967
AGAP003914-PB PUF 969 1002
AGAP003914-PB PUF 1005 1039
AGAP003914-PB PUF 1041 1075
AGAP003914-PB PUF 1077 1111
AGAP003914-PB PUF 1113 1147
AGAP003914-PB PUF 1149 1183
AGAP003914-PB PUF 1191 1223
AGAP003914-PC PUF 424 458
AGAP003914-PC PUF 460 493
AGAP003914-PC PUF 496 530
AGAP003914-PC PUF 532 566
AGAP003914-PC PUF 568 602
AGAP003914-PC PUF 604 638
AGAP003914-PC PUF 640 674
AGAP003914-PC PUF 682 714

Links

Other PUF family RBPs
Other Anopheles gambiae RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.960
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.960
AAEL012420 Aedes aegypti AAEL012420 I 0.946
GK14049 Drosophila willistoni FBgn0216055 I 0.896
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.896
GF18428 Drosophila ananassae FBgn0095446 I 0.892
GJ10105 Drosophila virilis FBgn0197393 I 0.892
pum Drosophila melanogaster FBgn0003165 D 0.888
GI22503 Drosophila mojavensis FBgn0145231 I 0.888
GH15257 Drosophila grimshawi FBgn0122732 I 0.888
GG17394 Drosophila erecta FBgn0109620 I 0.888
GM26283 Drosophila sechellia FBgn0181138 I 0.888
GE24797 Drosophila yakuba FBgn0241899 I 0.888
GL22345 Drosophila persimilis FBgn0159937 I 0.885
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.863
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.863
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.863
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.853
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.832
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.832
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.830
PHUM490070 Pediculus humanus PHUM490070 I 0.824
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.812
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.812
Pum2 Mus musculus ENSMUSG00000020594 D 0.812
PUM2 Sus scrofa ENSSSCG00000008600 I 0.812
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.812
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.812
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.812
PUM2 Bos taurus ENSBTAG00000011155 I 0.812
PUM2 Homo sapiens ENSG00000055917 D 0.812
PUM2 Equus caballus ENSECAG00000021930 I 0.812
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.812
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.809
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.805
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.805
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.805
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.805
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.805
PUM2 Canis familiaris ENSCAFG00000003839 I 0.805
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.805
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.805
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.802
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.801
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.801
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.801
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.801
PUM2 Oryzias latipes ENSORLG00000012611 I 0.798
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.794
BAB20864 Xenopus laevis BAB20864 I 0.794
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.794
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.791
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.791
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.791
PUM1 Oryzias latipes ENSORLG00000011482 I 0.791
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.791
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.787
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.787
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.787
AAH80379 Xenopus laevis AAH80379 I 0.787
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.787
BAC57980 Xenopus laevis BAC57980 I 0.787
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.784
AAL14121 Xenopus laevis AAL14121 I 0.783
PUM1 Microcebus murinus ENSMICG00000007713 I 0.783
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.780
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.776
PUM1 Equus caballus ENSECAG00000021369 I 0.776
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.776
Pum1 Mus musculus ENSMUSG00000028580 I 0.773
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.773
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.773
PUM1 Homo sapiens ENSG00000134644 D 0.773
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.773
PUM1 Bos taurus ENSBTAG00000018979 I 0.773
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.773
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.769
PUM1 Sorex araneus ENSSARG00000003055 I 0.769
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.769
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.769
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.769
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.769
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.769
PUM1 Canis familiaris ENSCAFG00000011205 I 0.769
PUM1 Sus scrofa ENSSSCG00000003591 I 0.765
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.762
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.758
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.726
105390 Helobdella robusta 105390 I 0.708