GI22503 (Drosophila mojavensis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 FBgn0145231 T24327_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.975
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.975
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.971
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.971
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.971
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.971
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.971
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.799
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.799
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.799
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.795
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.795
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.773
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.773
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0171720 PUF 422 456
FBpp0171720 PUF 458 491
FBpp0171720 PUF 494 528
FBpp0171720 PUF 530 564
FBpp0171720 PUF 566 600
FBpp0171720 PUF 602 636
FBpp0171720 PUF 638 672
FBpp0171720 PUF 679 712

Links

Other PUF family RBPs
Other Drosophila mojavensis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ10105 Drosophila virilis FBgn0197393 I 0.982
GF18428 Drosophila ananassae FBgn0095446 I 0.978
GK14049 Drosophila willistoni FBgn0216055 I 0.978
GH15257 Drosophila grimshawi FBgn0122732 I 0.978
pum Drosophila melanogaster FBgn0003165 D 0.975
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.975
GM26283 Drosophila sechellia FBgn0181138 I 0.975
GE24797 Drosophila yakuba FBgn0241899 I 0.975
GG17394 Drosophila erecta FBgn0109620 I 0.975
GL22345 Drosophila persimilis FBgn0159937 I 0.964
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.888
AGAP003914 Anopheles gambiae AGAP003914 I 0.888
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.888
AAEL012420 Aedes aegypti AAEL012420 I 0.885
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.878
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.874
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.863
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.863
PHUM490070 Pediculus humanus PHUM490070 I 0.845
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.828
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.828
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.824
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.809
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.809
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.809
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.806
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.806
PUM2 Bos taurus ENSBTAG00000011155 I 0.806
PUM2 Homo sapiens ENSG00000055917 D 0.806
PUM2 Equus caballus ENSECAG00000021930 I 0.806
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.806
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.806
PUM2 Sus scrofa ENSSSCG00000008600 I 0.806
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.806
Pum2 Mus musculus ENSMUSG00000020594 D 0.802
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.802
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.799
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.799
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.799
PUM2 Canis familiaris ENSCAFG00000003839 I 0.799
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.799
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.799
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.799
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.795
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.795
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.791
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.789
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.788
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.788
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.788
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.788
PUM2 Oryzias latipes ENSORLG00000012611 I 0.788
BAB20864 Xenopus laevis BAB20864 I 0.784
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.784
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.784
PUM1 Oryzias latipes ENSORLG00000011482 I 0.781
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.781
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.781
BAC57980 Xenopus laevis BAC57980 I 0.781
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.781
AAH80379 Xenopus laevis AAH80379 I 0.781
PUM1 Microcebus murinus ENSMICG00000007713 I 0.777
AAL14121 Xenopus laevis AAL14121 I 0.777
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.777
Pum1 Mus musculus ENSMUSG00000028580 I 0.777
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.777
PUM1 Sorex araneus ENSSARG00000003055 I 0.773
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.773
PUM1 Bos taurus ENSBTAG00000018979 I 0.773
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.773
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.773
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.773
PUM1 Homo sapiens ENSG00000134644 D 0.773
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.771
PUM1 Canis familiaris ENSCAFG00000011205 I 0.770
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.770
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.770
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.770
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.770
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.770
PUM1 Equus caballus ENSECAG00000021369 I 0.770
PUM1 Sus scrofa ENSSSCG00000003591 I 0.766
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.766
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.763
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.763
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.763
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.748
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.719
105390 Helobdella robusta 105390 I 0.705