Pum2 (Rattus norvegicus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSRNOG00000006180 T24263_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.989
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.989
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.989
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.985
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.985
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.898
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.898
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.809
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.809
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.809
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.809
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.809
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.809
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000008359 PUF 724 757
ENSRNOP00000008359 PUF 759 791
ENSRNOP00000008359 PUF 795 829
ENSRNOP00000008359 PUF 831 865
ENSRNOP00000008359 PUF 867 901
ENSRNOP00000008359 PUF 903 937
ENSRNOP00000008359 PUF 939 973
ENSRNOP00000008359 PUF 985 1016
ENSRNOP00000035814 PUF 486 519
ENSRNOP00000035814 PUF 521 553
ENSRNOP00000035814 PUF 557 591
ENSRNOP00000035814 PUF 593 627
ENSRNOP00000035814 PUF 629 663
ENSRNOP00000035814 PUF 665 699
ENSRNOP00000035814 PUF 701 735
ENSRNOP00000035814 PUF 747 778
ENSRNOP00000059013 PUF 565 598
ENSRNOP00000059013 PUF 600 632
ENSRNOP00000059013 PUF 636 668
ENSRNOP00000059013 PUF 674 708
ENSRNOP00000059013 PUF 710 744
ENSRNOP00000059013 PUF 746 780
ENSRNOP00000059013 PUF 782 816
ENSRNOP00000059013 PUF 828 859

Links

Other PUF family RBPs
Other Rattus norvegicus RBPs

90 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.996
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.989
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.989
PUM2 Homo sapiens ENSG00000055917 D 0.989
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.989
PUM2 Bos taurus ENSBTAG00000011155 I 0.989
PUM2 Sus scrofa ENSSSCG00000008600 I 0.989
PUM2 Equus caballus ENSECAG00000021930 I 0.989
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.989
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.989
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.989
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.989
PUM2 Canis familiaris ENSCAFG00000003839 I 0.989
Pum2 Mus musculus ENSMUSG00000020594 D 0.985
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.985
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.982
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.982
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.982
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.982
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.978
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.967
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.967
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.956
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.949
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.945
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.945
PUM2 Oryzias latipes ENSORLG00000012611 I 0.938
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.934
BAB20864 Xenopus laevis BAB20864 I 0.919
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.916
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.916
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.912
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.912
AAH80379 Xenopus laevis AAH80379 I 0.908
BAC57980 Xenopus laevis BAC57980 I 0.908
PUM1 Microcebus murinus ENSMICG00000007713 I 0.908
AAL14121 Xenopus laevis AAL14121 I 0.905
PUM1 Sus scrofa ENSSSCG00000003591 I 0.905
PUM1 Oryzias latipes ENSORLG00000011482 I 0.902
PUM1 Bos taurus ENSBTAG00000018979 I 0.902
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.901
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.901
PUM1 Homo sapiens ENSG00000134644 D 0.901
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.901
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.898
PUM1 Canis familiaris ENSCAFG00000011205 I 0.897
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.897
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.897
PUM1 Equus caballus ENSECAG00000021369 I 0.895
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.894
PUM1 Sorex araneus ENSSARG00000003055 I 0.894
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.894
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.894
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.894
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.894
Pum1 Mus musculus ENSMUSG00000028580 I 0.891
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.891
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.887
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.886
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.875
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.846
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.846
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.837
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.820
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.815
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.812
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.809
GM26283 Drosophila sechellia FBgn0181138 I 0.809
GK14049 Drosophila willistoni FBgn0216055 I 0.809
GG17394 Drosophila erecta FBgn0109620 I 0.809
GF18428 Drosophila ananassae FBgn0095446 I 0.809
pum Drosophila melanogaster FBgn0003165 D 0.809
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.809
GE24797 Drosophila yakuba FBgn0241899 I 0.809
GH15257 Drosophila grimshawi FBgn0122732 I 0.806
AAEL012420 Aedes aegypti AAEL012420 I 0.806
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.806
AGAP003914 Anopheles gambiae AGAP003914 I 0.805
PHUM490070 Pediculus humanus PHUM490070 I 0.802
GJ10105 Drosophila virilis FBgn0197393 I 0.802
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.799
GI22503 Drosophila mojavensis FBgn0145231 I 0.799
GL22345 Drosophila persimilis FBgn0159937 I 0.799
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.798
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.791
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.788
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.781
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.753
105390 Helobdella robusta 105390 I 0.708