nasonia_NCBI_hmm823294 (Nasonia vitripennis)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 nasonia_NCBI_hmm823294 T23998_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.867
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.867
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.863
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.863
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.863
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.863
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.863
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.798
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.798
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.798
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.798
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.798
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.785
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.785
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm823294 PUF 810 844
nasonia_NCBI_hmm823294 PUF 846 879
nasonia_NCBI_hmm823294 PUF 882 916
nasonia_NCBI_hmm823294 PUF 918 952
nasonia_NCBI_hmm823294 PUF 954 988
nasonia_NCBI_hmm823294 PUF 990 1024
nasonia_NCBI_hmm823294 PUF 1026 1056
nasonia_NCBI_hmm823294 PUF 1068 1100

Links

Other PUF family RBPs
Other Nasonia vitripennis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.971
GM26283 Drosophila sechellia FBgn0181138 I 0.867
pum Drosophila melanogaster FBgn0003165 D 0.867
GE24797 Drosophila yakuba FBgn0241899 I 0.863
GJ10105 Drosophila virilis FBgn0197393 I 0.863
GI22503 Drosophila mojavensis FBgn0145231 I 0.863
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.863
GG17394 Drosophila erecta FBgn0109620 I 0.863
AGAP003914 Anopheles gambiae AGAP003914 I 0.863
GF18428 Drosophila ananassae FBgn0095446 I 0.860
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.860
GK14049 Drosophila willistoni FBgn0216055 I 0.860
GH15257 Drosophila grimshawi FBgn0122732 I 0.853
AAEL012420 Aedes aegypti AAEL012420 I 0.849
GL22345 Drosophila persimilis FBgn0159937 I 0.849
BGIBMGA003401 Bombyx mori BGIBMGA003401 I 0.849
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.845
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.845
PHUM490070 Pediculus humanus PHUM490070 I 0.834
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.823
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.809
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.809
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.809
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.805
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.805
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.805
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.805
Pum2 Mus musculus ENSMUSG00000020594 D 0.805
PUM2 Equus caballus ENSECAG00000021930 I 0.805
PUM2 Bos taurus ENSBTAG00000011155 I 0.805
PUM2 Homo sapiens ENSG00000055917 D 0.805
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.805
PUM2 Sus scrofa ENSSSCG00000008600 I 0.805
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.803
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.803
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.798
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.798
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.798
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.798
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.798
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.798
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.798
PUM2 Canis familiaris ENSCAFG00000003839 I 0.798
PUM2 Oryzias latipes ENSORLG00000012611 I 0.797
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.794
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.794
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.794
BAB20864 Xenopus laevis BAB20864 I 0.791
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.791
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.791
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.790
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.788
PUM1 Equus caballus ENSECAG00000021369 I 0.788
PUM1 Bos taurus ENSBTAG00000018979 I 0.788
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.787
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.787
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.785
PUM1 Homo sapiens ENSG00000134644 D 0.785
PUM1 Canis familiaris ENSCAFG00000011205 I 0.785
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.785
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.785
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.785
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.785
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.784
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.784
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.784
AAH80379 Xenopus laevis AAH80379 I 0.783
BAC57980 Xenopus laevis BAC57980 I 0.783
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.783
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.783
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.781
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.781
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.781
Pum1 Mus musculus ENSMUSG00000028580 I 0.781
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.781
PUM1 Sus scrofa ENSSSCG00000003591 I 0.781
PUM1 Sorex araneus ENSSARG00000003055 I 0.781
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.781
AAL14121 Xenopus laevis AAL14121 I 0.780
PUM1 Oryzias latipes ENSORLG00000011482 I 0.780
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.780
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.777
PUM1 Microcebus murinus ENSMICG00000007713 I 0.776
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.774
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.773
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.773
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.769
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.726
105390 Helobdella robusta 105390 I 0.703