BGIBMGA003401 (Bombyx mori)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 BGIBMGA003401 T25000_0.6 SilkDB (2008-Apr-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.867
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.867
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.863
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.863
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.863
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.863
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.863
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.791
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.791
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.791
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.788
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.788
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.766
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIBMGA003401 PUF 164 198
BGIBMGA003401 PUF 200 233
BGIBMGA003401 PUF 236 270
BGIBMGA003401 PUF 272 306
BGIBMGA003401 PUF 309 342
BGIBMGA003401 PUF 344 378
BGIBMGA003401 PUF 380 414
BGIBMGA003401 PUF 421 454

Links

Other PUF family RBPs
Other Bombyx mori RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM26283 Drosophila sechellia FBgn0181138 I 0.867
GF18428 Drosophila ananassae FBgn0095446 I 0.867
pum Drosophila melanogaster FBgn0003165 D 0.867
GK14049 Drosophila willistoni FBgn0216055 I 0.867
amel4_ncbi_hmm4895 Apis mellifera amel4_ncbi_hmm4895 I 0.863
GG17394 Drosophila erecta FBgn0109620 I 0.863
GI22503 Drosophila mojavensis FBgn0145231 I 0.863
GA27465-RA Drosophila pseudoobscura FBgn0248832 I 0.863
GE24797 Drosophila yakuba FBgn0241899 I 0.863
CPIJ016844 Culex quinquefasciatus CPIJ016844 I 0.860
AAEL012420 Aedes aegypti AAEL012420 I 0.860
CpipJ_CPIJ016844 Culex pipiens CpipJ_CPIJ016844 I 0.860
GJ10105 Drosophila virilis FBgn0197393 I 0.860
GH15257 Drosophila grimshawi FBgn0122732 I 0.853
AGAP003914 Anopheles gambiae AGAP003914 I 0.853
GL22345 Drosophila persimilis FBgn0159937 I 0.853
nasonia_NCBI_hmm823294 Nasonia vitripennis nasonia_NCBI_hmm823294 I 0.849
DGIL_AUG5s1082g1t1 Acyrtosiphon pisum DGIL_AUG5s1082g1t1 I 0.842
PHUM490070 Pediculus humanus PHUM490070 I 0.824
PASA_GEN_0800110 Daphnia pulex PASA_GEN_0800110 I 0.824
XP_001187223.1 Strongylocentrotus purpuratus XP_001187223.1 I 0.814
XP_794621.2 Strongylocentrotus purpuratus XP_794621.2 I 0.814
e_gw.54.41.1 Nematostella vectensis e_gw.54.41.1 I 0.806
PUM2 Monodelphis domestica ENSMODG00000009811 I 0.802
Q2VB18_CHICK Gallus gallus ENSGALG00000016481 I 0.799
PUM2 Taeniopygia guttata ENSTGUG00000013149 I 0.799
ENSOANG00000003230 Ornithorhynchus anatinus ENSOANG00000003230 I 0.799
PUM2 Oryctolagus cuniculus ENSOCUG00000017908 I 0.795
PUM2 Meleagris gallopavo ENSMGAG00000014040 I 0.795
estExt_Genewise1Plus.C_sca_670070 Lottia gigantea estExt_Genewise1Plus.C_sca_670070 I 0.795
PUM2 Cavia porcellus ENSCPOG00000007075 I 0.795
PUM2 Sus scrofa ENSSSCG00000008600 I 0.795
PUM2 Equus caballus ENSECAG00000021930 I 0.795
ENSPPYG00000012617 Pongo pygmaeus ENSPPYG00000012617 I 0.795
PUM2 Callithrix jacchus ENSCJAG00000007450 I 0.795
PUM2 Bos taurus ENSBTAG00000011155 I 0.795
PUM2 Homo sapiens ENSG00000055917 D 0.795
estExt_Genewise1Plus.C_4390035 Capitella teleta estExt_Genewise1Plus.C_4390035 I 0.792
Pum2 Mus musculus ENSMUSG00000020594 D 0.791
Ame_R002800 Ailuropoda melanoleuca Ame_R002800 I 0.791
PUM2 Gorilla gorilla ENSGGOG00000011374 I 0.791
PUM2 Vicugna pacos ENSVPAG00000005056 I 0.791
Pum2 Rattus norvegicus ENSRNOG00000006180 I 0.791
PUM2 Pan troglodytes ENSPTRG00000011692 I 0.791
PUM2 Anolis carolinensis ENSACAG00000010491 I 0.791
PUM2 Canis familiaris ENSCAFG00000003839 I 0.791
PUM2 Tupaia belangeri ENSTBEG00000008729 I 0.788
PUM2 Loxodonta africana ENSLAFG00000009278 I 0.788
PUM1 Monodelphis domestica ENSMODG00000017067 I 0.784
PUM1 Oryzias latipes ENSORLG00000011482 I 0.784
PUM1 Anolis carolinensis ENSACAG00000000682 I 0.784
PUM1_CHICK Gallus gallus ENSGALG00000000597 I 0.781
PUM1 Meleagris gallopavo ENSMGAG00000000724 I 0.781
BAC57980 Xenopus laevis BAC57980 I 0.777
BAB20864 Xenopus laevis BAB20864 I 0.777
PUM2 Oryzias latipes ENSORLG00000012611 I 0.777
AAH80379 Xenopus laevis AAH80379 I 0.777
pum2 Xenopus tropicalis ENSXETG00000008903 I 0.777
PUM2 Tarsius syrichta ENSTSYG00000014463 I 0.777
PUM2 Takifugu rubripes ENSTRUG00000018167 I 0.773
PUM1 Microcebus murinus ENSMICG00000007713 I 0.773
AAL14121 Xenopus laevis AAL14121 I 0.773
PUM2 Gasterosteus aculeatus ENSGACG00000009670 I 0.773
e_gw1.9.429.1 Trichoplax adhaerens e_gw1.9.429.1 I 0.771
PUM2 Tursiops truncatus ENSTTRG00000004887 I 0.770
Pum1 Mus musculus ENSMUSG00000028580 I 0.766
PUM1 Takifugu rubripes ENSTRUG00000013121 I 0.766
PUM1 Oryctolagus cuniculus ENSOCUG00000008641 I 0.766
PUM1 Homo sapiens ENSG00000134644 D 0.766
PUM1 Erinaceus europaeus ENSEEUG00000003871 I 0.766
PUM1 Bos taurus ENSBTAG00000018979 I 0.766
PUM1 Equus caballus ENSECAG00000021369 I 0.766
ENSPPYG00000001621 Pongo pygmaeus ENSPPYG00000001621 I 0.766
Q3YAQ1_MACMU Macaca mulatta ENSMMUG00000013520 I 0.766
Pum1 Rattus norvegicus ENSRNOG00000011709 I 0.766
PUM1 Pan troglodytes ENSPTRG00000000453 I 0.763
LOC100415491 Callithrix jacchus ENSCJAG00000006035 I 0.763
PUM1 Canis familiaris ENSCAFG00000011205 I 0.763
PUM1 Sus scrofa ENSSSCG00000003591 I 0.763
Ame_R012380 Ailuropoda melanoleuca Ame_R012380 I 0.763
PUM1 Vicugna pacos ENSVPAG00000005902 I 0.763
PUM1 Sorex araneus ENSSARG00000003055 I 0.763
PUM1 Gasterosteus aculeatus ENSGACG00000005717 I 0.763
PUM1 Loxodonta africana ENSLAFG00000003178 I 0.763
PUM1 Pteropus vampyrus ENSPVAG00000005207 I 0.755
PUM1 Tetraodon nigroviridis ENSTNIG00000016983 I 0.755
PUM1 Tursiops truncatus ENSTTRG00000007436 I 0.752
ENSCING00000003888 Ciona intestinalis ENSCING00000003888 I 0.712
105390 Helobdella robusta 105390 I 0.701