BGIOSIBCE033690 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE033690 T33088_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE033690 RRM 43 112

Links

Other RRM family RBPs
Other Oryza indica RBPs

122 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB05G004860 Sorghum bicolor Sb05g004860 N 0.972
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.972
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.972
mgf002767m Mimulus guttatus mgf002767m N 0.944
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.944
mgf012202m Mimulus guttatus mgf012202m N 0.944
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.944
MDP0000208337 Malus x domestica MDP0000208337 N 0.943
MDP0000283046 Malus x domestica MDP0000283046 N 0.930
MDP0000142436 Malus x domestica MDP0000142436 N 0.930
ppa004010m Prunus persica ppa004010m N 0.915
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.915
28644.m000926 Ricinus communis 28644.m000926 N 0.915
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.915
PK22244.1 Cannabis sativa PK22244.1 N 0.915
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.915
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.915
gw1.36.17.1 Physcomitrella patens gw1.36.17.1 N 0.900
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.887
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.887
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.859
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.789
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.789
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.775
MDP0000295683 Malus x domestica MDP0000295683 N 0.771
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.771
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.771
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.761
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.761
ISCW015573 Ixodes scapularis ISCW015573 N 0.761
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.761
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.761
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.761
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.761
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.761
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.761
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.761
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.761
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.761
AAH80037 Xenopus laevis AAH80037 N 0.761
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.761
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.761
AAH41291 Xenopus laevis AAH41291 N 0.761
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.761
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.761
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.761
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.761
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.761
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.761
CSTF2 Homo sapiens ENSG00000101811 N 0.761
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.761
AAB50269 Xenopus laevis AAB50269 N 0.761
CSTF2 Felis catus ENSFCAG00000007000 N 0.761
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.761
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.761
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.761
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.761
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.761
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.761
Cstf2 Mus musculus ENSMUSG00000031256 N 0.761
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.757
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.757
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.757
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.746
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.746
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.746
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.746
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.746
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.746
Cstf2t Mus musculus ENSMUSG00000053536 N 0.746
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.746
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.746
CSTF2T Homo sapiens ENSG00000177613 N 0.746
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.746
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.746
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.746
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.746
CSTF2T Felis catus ENSFCAG00000013011 N 0.746
cstf2 Danio rerio ENSDARG00000044009 N 0.746
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.746
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.746
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.746
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.746
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.746
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.746
CSTF2T Sorex araneus ENSSARG00000002013 N 0.746
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.746
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.746
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.746
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.746
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.746
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.732
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.732
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.732
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.732
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.732
AAEL013869 Aedes aegypti AAEL013869 N 0.732
AGAP010918 Anopheles gambiae AGAP010918 N 0.718
AGAP004414 Anopheles gambiae AGAP004414 N 0.718
CstF-64 Drosophila melanogaster FBgn0027841 N 0.718
GD19237 Drosophila simulans FBgn0190742 N 0.718
GJ10336 Drosophila virilis FBgn0197622 N 0.718
GA20525-RA Drosophila pseudoobscura FBgn0080519 N 0.718
GM17877 Drosophila sechellia FBgn0172784 N 0.718
GL24357 Drosophila persimilis FBgn0161947 N 0.718
GG22991 Drosophila erecta FBgn0115148 N 0.718
GH18352 Drosophila grimshawi FBgn0125820 N 0.718
GI23336 Drosophila mojavensis FBgn0146063 N 0.718
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.718
GK14167 Drosophila willistoni FBgn0216173 N 0.718
CSTF2 Equus caballus ENSECAG00000009325 N 0.718
s_451557 Phytophthora sojae s_451557 N 0.718
GF16912 Drosophila ananassae FBgn0093932 N 0.718
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.718
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.718
GE25546 Drosophila yakuba FBgn0242611 N 0.718
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.714
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.714
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.704
XP_002159315.1 Hydra magnipapillata XP_002159315.1 N 0.704
PITG_14249 Phytophthora infestans PITG_14249 N 0.704
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.704