gw1.36.17.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.36.17.1 T53244_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.36.17.1 RRM 1 69

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000208337 Malus x domestica MDP0000208337 N 0.900
BGIOSIBCE033690 Oryza indica BGIOSIBCE033690 N 0.900
SB05G004860 Sorghum bicolor Sb05g004860 N 0.887
MDP0000142436 Malus x domestica MDP0000142436 N 0.887
mgf002767m Mimulus guttatus mgf002767m N 0.887
LOC_Os11g07490 Oryza sativa LOC_Os11g07490 N 0.887
MDP0000283046 Malus x domestica MDP0000283046 N 0.887
GSVIVG00013670001 Vitis vinifera GSVIVG00013670001 N 0.887
GRMZM2G174919 Zea mays GRMZM2G174919 N 0.887
mgf012202m Mimulus guttatus mgf012202m N 0.887
BRADI4G24180 Brachypodium distachyon BRADI4G24180 N 0.873
PK22244.1 Cannabis sativa PK22244.1 N 0.873
Cucsa.364140 Cucumis sativus Cucsa.364140 N 0.873
ppa004010m Prunus persica ppa004010m N 0.873
28644.m000926 Ricinus communis 28644.m000926 N 0.873
Glyma10g36350.1 Glycine max Glyma10g36350.1 N 0.873
Glyma20g31220.1 Glycine max Glyma20g31220.1 N 0.873
LjSGA_018671.1 Lotus japonicus LjSGA_018671.1 N 0.873
gw1.20.80.1 Selaginella moellendorfii gw1.20.80.1 N 0.873
CSTF64 Arabidopsis thaliana AT1G71800-TAIR-G N 0.859
XM_002887343.1 Arabidopsis lyrata Al_scaffold_0002_1857 N 0.859
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.761
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.761
Ame_R018329 Ailuropoda melanoleuca Ame_R018329 N 0.757
ENSOANG00000004208 Ornithorhynchus anatinus ENSOANG00000004208 N 0.757
CSTF2 Choloepus hoffmanni ENSCHOG00000012803 N 0.754
CSTF2 Tupaia belangeri ENSTBEG00000010029 N 0.754
CSTF2 Homo sapiens ENSG00000101811 N 0.746
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.746
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.746
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.746
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.746
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.746
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.746
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.746
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.746
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.746
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.746
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.746
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.746
fgeneshTA2_pg.C_scaffold_5000618 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_5000618 N 0.746
CSTF2 Felis catus ENSFCAG00000007000 N 0.746
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.746
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.746
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.746
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.746
Cstf2 Mus musculus ENSMUSG00000031256 N 0.746
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.746
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.746
AAH41291 Xenopus laevis AAH41291 N 0.746
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.746
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.746
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.746
SPRG_10503 Saprolegnia parasitica SPRG_10503 N 0.746
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.746
AAH80037 Xenopus laevis AAH80037 N 0.746
AAB50269 Xenopus laevis AAB50269 N 0.746
CSTF2 Vicugna pacos ENSVPAG00000006466 N 0.743
MDP0000295683 Malus x domestica MDP0000295683 N 0.739
amel4_ncbi_hmm3649 Apis mellifera amel4_ncbi_hmm3649 N 0.732
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.732
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.732
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.732
DGIL_AUG5s12011g4t1 Acyrtosiphon pisum DGIL_AUG5s12011g4t1 N 0.732
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.732
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.732
CSTF2T Sorex araneus ENSSARG00000002013 N 0.732
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.732
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.732
BGIBMGA006476 Bombyx mori BGIBMGA006476 N 0.732
s_451557 Phytophthora sojae s_451557 N 0.732
fgenesh1_pg.C_scaffold_74000038 Phytophthora ramorum fgenesh1_pg.C_scaffold_74000038 N 0.732
ISCW015573 Ixodes scapularis ISCW015573 N 0.732
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.732
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.732
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.732
DGIL_AUG5s2502g11t1 Acyrtosiphon pisum DGIL_AUG5s2502g11t1 N 0.732
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.732
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.732
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.732
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.732
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.732
cstf2 Danio rerio ENSDARG00000044009 N 0.732
CSTF2T Felis catus ENSFCAG00000013011 N 0.732
CSTF2T Homo sapiens ENSG00000177613 N 0.732
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.732
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.732
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.732
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.732
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.732
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.732
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.732
Cstf2t Mus musculus ENSMUSG00000053536 N 0.732
nasonia_NCBI_hmm235054 Nasonia vitripennis nasonia_NCBI_hmm235054 N 0.732
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.732
estExt_fgenesh1_pm.C_80118 Phytophthora capsici estExt_fgenesh1_pm.C_80118 N 0.718
PASA_GEN_0100181 Daphnia pulex PASA_GEN_0100181 N 0.718
CSTF2 Echinops telfairi ENSETEG00000004931 N 0.718
SPPG_01899 Spizellomyces punctatus SPPG_01899 N 0.718
PITG_14249 Phytophthora infestans PITG_14249 N 0.718
XP_001186020.1 Strongylocentrotus purpuratus XP_001186020.1 N 0.710
XP_001181887.1 Strongylocentrotus purpuratus XP_001181887.1 N 0.710
CSTF2 Equus caballus ENSECAG00000009325 N 0.704
AAEL013869 Aedes aegypti AAEL013869 N 0.704
CpipJ_CPIJ012662 Culex pipiens CpipJ_CPIJ012662 N 0.704
CPIJ012662 Culex quinquefasciatus CPIJ012662 N 0.704
CSTF2T Oryctolagus cuniculus ENSOCUG00000004647 N 0.704