ENSCAFG00000020428 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000020428 T35206_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.768
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.768
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.768
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000030299 RRM 16 85
ENSCAFP00000030299 RRM 107 172

Links

Other RRM family RBPs
Other Canis familiaris RBPs

98 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.759
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.743
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.738
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.738
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.738
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.738
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.738
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.738
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.738
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.738
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.738
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.738
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.738
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.738
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.738
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.738
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.738
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.738
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.738
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.738
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.738
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.738
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.738
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.738
HNRNPA1 Homo sapiens ENSG00000135486 D 0.738
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.738
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.731
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.731
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.731
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.731
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.731
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.731
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.731
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.729
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.729
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.729
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.725
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.725
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.724
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.724
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.724
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.724
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.724
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.724
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.724
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.724
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.724
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.724
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.724
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.724
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.721
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.721
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.721
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.721
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.717
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.717
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.717
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.717
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.717
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.717
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.717
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.715
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.715
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.714
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.714
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.710
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.710
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.710
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.710
LOC785445 Bos taurus ENSBTAG00000025621 I 0.710
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.710
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.709
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.708
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.708
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.708
LOC100054206 Equus caballus ENSECAG00000006699 I 0.708
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.707
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.704
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.704
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.704
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.703
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.703
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.703
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.703
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.703
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.703
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.703
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.701
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.701
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.701
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.700