ENSCAFG00000003418 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000003418 T35004_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.812
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.812
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.812
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000032064 RRM 16 84
ENSCAFP00000032064 RRM 104 173

Links

Other RRM family RBPs
Other Canis familiaris RBPs

175 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.789
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.785
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.782
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.782
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.782
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.782
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.782
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.782
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.782
HNRNPA1 Homo sapiens ENSG00000135486 D 0.782
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.782
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.782
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.782
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.782
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.782
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.782
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.782
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.782
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.782
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.782
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.782
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.782
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.782
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.782
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.782
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.782
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.782
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.782
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.782
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.782
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.782
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.776
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.776
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.776
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.776
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.776
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.776
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.776
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.776
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.776
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.775
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.775
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.771
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.769
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.769
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.769
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.769
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.769
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.769
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.769
LOC785445 Bos taurus ENSBTAG00000025621 I 0.769
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.768
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.767
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.762
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.762
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.762
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.762
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.762
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.762
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.762
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.762
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.761
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.757
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.757
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.755
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.755
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.755
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.755
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.755
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.753
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.753
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.753
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.748
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.748
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.748
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.748
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.748
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.748
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.748
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.747
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.747
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.746
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.746
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.743
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.741
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.741
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.741
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.741
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.741
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.741
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.740
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.740
LOC100054206 Equus caballus ENSECAG00000006699 I 0.740
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.740
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.740
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.739
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.739
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.739
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.736
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.736
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.735
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.735
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.735
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.733
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.732
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.732
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.729
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.728
AAH45260 Xenopus laevis AAH45260 I 0.728
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.728
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.728
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.728
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.728
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.728
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.728
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.728
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.726
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.726
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.725
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.725
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.725
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.724
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.724
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.721
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.721
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.721
AAH72090 Xenopus laevis AAH72090 I 0.721
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.721
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.721
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.721
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.721
CBU92546 Xenopus laevis CBU92546 I 0.721
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.721
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.721
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.721
CBF67672 Xenopus laevis CBF67672 I 0.721
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.721
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.719
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.719
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.719
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.719
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.717
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.715
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.712
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.712
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.712
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.711
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.711
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.711
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.710
AAA49742 Xenopus laevis AAA49742 I 0.707
AAA49741 Xenopus laevis AAA49741 I 0.707
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.707
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.707
CBF67555 Xenopus laevis CBF67555 I 0.707
P17130 Xenopus laevis P17130 I 0.707
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.707
CBU92428 Xenopus laevis CBU92428 I 0.707
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.707
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.707
ENSOGAG00000002398 Otolemur garnettii ENSOGAG00000002398 I 0.706
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.706
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.706
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.704
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.704
ENSCAFG00000020428 Canis familiaris ENSCAFG00000020428 I 0.704
ENSMICG00000012083 Microcebus murinus ENSMICG00000012083 I 0.701
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.701
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.701
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.701
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.701
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.701
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.701
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.701
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.701